MmuINT0024639 @ mm9
Intron Retention
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:74594244-74598746:+
Coord C1 exon
chr10:74594244-74594429
Coord A exon
chr10:74594430-74598638
Coord C2 exon
chr10:74598639-74598746
Length
4209 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTCCTCCTTCCTCCCTGCAGGCC
3' ss Score
13.17
Exon sequences
Seq C1 exon
CCCATGAAGCCTCTGAAAGCCGCTGCCACCACCTCTCAGCCTGTGCTGACCAGCCAGCAGATTGAGACCATTTTCTTCAAAGTGCCTGAGCTCTACGAGATCCACAAGGAGTTCTACGATGGGCTGTTCCCCCGAGTGCAGCAGTGGAGCCACCAGCAGCGTGTAGGGGACCTCTTCCAGAAGCTG
Seq A exon
GTGAGTGGCTTGGAAAGGCTGGCGCTTGCGGCTGTGGCCGTAGCTGGCAAAGGACTAGGTTTGTCCCTTGGACATGTGTCACAGGGAGATAACTCAGGAGACAATCGGGAGAGCCTGGGGTGTGTCTGAGTACCTTTGGTGCCAAAGGGCAGGCCTCTGGGAGGGTGAGGTGGAGGGACACGTGGCCAGCCCAGCTGGAGTCCAGTAAGTGTGTTGTCCTGATCTTGGCTCCCTACAGTGTTGCTTGGCGTTCCCAGTGTCCACACAGATCAAGTTGCCTTTGGGACCAAAATGTTTTTGCTGCCCAGCTCAGCCAGACTTGGGCTCTTAGTGGAGAGGTGACTACACATGACAGACAGCACACTGGGACTTAGTTACAGGTCAGCCTCTGTATCTGCAGGTTTCCCATCTGCACATTGAACTATCCAAGTGTCGAAAAAGAATTATGCATGTGCTGCATATATGCGTTTCTTTGGTATTGTCCCCTCAACAATACAGCACAACAGCTATTTTCATAGTGATCACATTGGATTAGGCCTCGAGGTGATTCAAAGCTGGAGTCTGGGTGCGAGGTATATAAATGTCAGTTCAGCTGTTTGGGAAGCTGAAGCAATGAGTGTTTGAGCCCAGGAGTTTAGGGGACCAACCTAGGCCAACTTGGTAAATAAGAGAAGAAAGAGAGGGAGTGTGTGAAGCTAGGAACCTCCACAGAGAAGCTTGGATCAGGTGACAGCCACATGCTGTGAGCAAAGCTGCTTCCTACAGAGCTGGGTCCCACTGTGATCTGAAGGGGCAGATGGTGTGCCCAGGGGGCATACACCATCTTACCTGCACTGGGGCGGCCCTGTAAGGCAGGTACTGTTTTCAAAGAGATTGATTGTACCAGGAAGGTTAAATGAGTCCTTTGTTTATATATGCCATAAAGGGGTACATCTGCCTAGCATAAGGGGCCGTTAATCCAAAAGACAAGAGGAGTTAGACAGCAGGTTAGAATTTCTGTAAGTCCTCAGTAGATTAGAACTGATCAAAAATCTGCCAGGTACCCAGGGAGATGTTAGTACAGGGTAGGAAGAGGAAAAGAGGGGGTTCCTGGCAGAACTGCCCAGCAGAGAGGTTACCCCTCCTAGAAAAGCCACAGGAAGTTAATGCTGGCCCTGGTCTGTTTCTGAAGATGGCTGATCCTAATTCCTAGATTGTTGGTGCTTCTTATACACACACACACACACACACACACACACACACTCACACTCACACTCACACTCACACACTTTGCTTGTAACCTTCTCCTCATACAGAAAATAAGTTCTTCAGGCTTGATAGTGATCCAAAGGCGGAGTCCCTGTAAGTGCAGGGTTCCTGAAGATGACCCATAGCTACATACCTTATTGAGTACCATACATCCAGATATCGTGTGACAAAATTTTTCCTGGGGAGACACACACACATGCACACACACGCCCTACTCACCCTATTTGCCTCACTTGTTCCAGATAGAGATCCCACAACAAACCAAAGTATAGATATCACCAAAGTCCATCTTGGTGAACCAGGGAGTTTTATAGGGGTGACTAACAAGAGTCTGGTTGAGGAGCAGAAATGACTCAATGACAGCTGCATCACCAAAGCCAGCCCAGCACAGGTAAGAGCTCACAAAAGCTAAGAACCTGGAACACACTGTCCAGTGTTCCCAGAGTGTCCTTTTAGGGTACCTCAGTTGCTCTAAACCTCTTCCAGGCAGCTTGTCTGTTTTCTGATTTTTTTCCAGGCAGCTGCTCTGTGTCTGGTCTCAAAAACAGTCTTTGCAGCTTGGCTTGTCTGAGAGAAGAAACTCAGCTTTTATTGTTTACTTTGGCAGAAGGGGGCCTAGTGAATCTGGTCAGTTTCAGGGACTTCCTGAATCTGTTTTGAGTTGTTTACCTTCCTACTCCAGGAACTCTGTGCAGAATGGAATGTTTCAATCTTGAGTAAAGGATTATGTAGCAGGAGGCCACTGGCCCCAGTCCAGGGTGTGGCTGTCCTCTTGGCTCTCCTTATCTCTCTGGTCTCTTCTCCCTTTCTCTTCTTGCCATGTGTCAATAAGTTTAAACCTTGCAGAGCAGACTCAACCAGAAGCCTTCAGAAAAGCAAAGAGTAGTGCTGATTTGGGGGAGGGGCGGCACACCCAGCACTCTCCCTAAAATAGTATTTGGAAACCACTCAGGGACTTTTCTTTCCCAGTCTTCTAAAACTCAGGGATGCTGGAACATAATGGTTTCTGTGTTGCTCTTCAGCTGTCTGCATGTATGAGATGCTGCAGGGGAGTTAATCCCCATTCCGTCTGCTGAGCATCTCATGTGTTTGATTAGTTGGTTGGTTGGTTGGCTGGTTGGTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTCGAACTCACTTTGTAGACCAGGCTGTCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTAGGATTAAAGGCATGCACCACCACGCCCGGCTTATCTCATGTGTTTTTAACCTGAGCTGAGTGCTGAGGACTTCCCAGGACAGACAGCCTTACTCTCCACCCTTTCCGACGACAGCAAGGCTAGCCCAGAATCCCCTCGGGAGTCCTAGGACCCAAGGAGTTCTCTGTACCTATTCCATTGTTGGCACCTGTTCTAGAGCCCTGGACTCTTGAGTTATTGCAACTGTGCCCATTTCCTGTAGTTCATTCTCAGTGTATGAGGTTTTGTTTGTAGTTGAAATTCTCTCCCCCAATCCCTGTCTGATTCAAAATCCAGGCCTGTCCAGTGTTGCGTGTATTTGGCTATGATGTCTCTAGGCTCCTTCTATCTGTGTCAGTTCCTAGAACTGACGATTTCTGAAGGGGACAGGTTACTTTGACTTGGACAGATATTTCCTCCCGTCCTTTTGGTACAGAATGACTACCGTAGGGATCCGTGTCCATCCCACGGCATACTAATGACATACTGGCAATCTCCGTTTTTACTGTTATCATTCGGTTCCAGCGTTGGGTTGCCAAAAACGTAAGAATTAATTTTTTAGTATTTCTCATGCCTGGAAGAAGTAAGCCCTTAGGCAAGAGGAAAGAAAAGTCACAAAAGTGGTCCTCAGCTGAAATGCTCCAGACTCCTCCCAGAGAGGCCGTCATGACCCTCTGGCAGCCGGGAGGCCCTCACTCAGTGGCCTCCAAAAGGGAAGACAAAGTGGAAGAGTATCCCGAGTCTTAGAGTTGCTCAGTGGAGGACGGTCTGGGATTCAAGCATGCCGCACAGCATATAAATGCAAATGCACGTGGGAATGAAATGTATGCTGAACCCAGGGAGAGCTCCAGGAACAGCAGATGCTCCGGGTTTCTAGCCCCGGGGCAGCTGCTGTGGGAGGCTCAGACCTAGCCAGCACGCCTGCCCTGGGTCCGCATGCTGTTGCTTGTGAAGACTAGGTTGTTCTCCCTCGCTAACTCTAAATGATGTGAGACCCAGAGATGATCATGGGAAGGCCACACATCCTTCCATCTACCCATGGAAATTGTGCTTAGTTGAGTGCATACGGGAGCAGGAGCTCAGTGAAGGAAACCTCTATCGATGTCTGTTTATTGAATAAAGGACCAGCACCATATGCCTCTCGCCTTGTGGCTGGCAGGCCTTCTACCTGCTGGATATGTGAGAGCCGGGCGCCCCCTGTGAGGTTTAGGAATGGCAGCTAACAGTCAGAACTCCTCTTTCCAGTCAGCCAGACATGTTCCTCACCTGCCTGACAGGATGAGATATGGGCCTAGCACCATGGTACCCAGACTCCATGGACCCTGGCCAGGGTGGCCTCCTCCATTTCACCTGCATAGGCGTGTTCATCTGGAGGCTCACCTCAAGTTTAAGCTGCTGCTCCCGGCATCCTTTATGCAAGCAGAGTGGGAGGAATAGGAAGGAGCTCCAAAGGGGGCCATTACCTGTCCAGGGCTATGACTCACTTCTCAACGTGTCATTTTAGGAGAGGGGATCGTGCTCCGTGTGTGGGGAGGTGAAGCAGGTGGGAGGAGGAGCTCGGAAGAGCAGGTTTCTGCAGCCCTCGCGCTGTCTGCCATAGCTGGGATTTTTCCAGAGCTATGCGAGAGAGCCCAATCCTTGGAACAGTAGGGAGTGGGTACCCACCTATCCCACCTCTGTCTCACCCCCTCCTCCTTCCTCCCTGCAG
Seq C2 exon
GCCAGCCAGCTGGGTGTGTACCGAGCCTTTGTGGATAACTACGGAGTGGCCATGGAAACTGCAGAGAAGTGCTGTCAGGCCAACGCTCAGTTTGCAGAAATCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681-Bcr:NM_001081412:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(32.3=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(18.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: