BtaINT0026811 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003724 | BRDT
Description
Bos taurus bromodomain, testis-specific (BRDT), mRNA. [Source:RefSeq mRNA;Acc:NM_001075852]
Coordinates
chr3:51555158-51563299:-
Coord C1 exon
chr3:51563128-51563299
Coord A exon
chr3:51555265-51563127
Coord C2 exon
chr3:51555158-51555264
Length
7863 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TTAAAAATGTGTGCATCTAGATG
3' ss Score
6.51
Exon sequences
Seq C1 exon
GTAAAGTCTTCTGTGCAAGATACAACCTCTGGGGTAACTAGCCTGGTTCATCAGACTGCATGTTCAAATGGAACACCACCAAACCACCACCAATTAGTGTTTAATCATCAAGAACCAAAACATTCACAGAGTGTGGAAAACATTTCACCTTTACAAATTCTGCCTCTTTTAG
Seq A exon
GTAAGAAATTAATGAGTAAATAGCTGTGATTGAACAGTTGACTTCTAAATGAAAATGCCAAGGTCATCCTAAATATTATGTATCTGAAATACTGAAAATCATAACTAGTAAATTCTAGGGTAGAAATAATCCCTGAAGCATATTCCTTTATACCCAAATGTATTCATTACATTTGAATGAAAGAAAATTGTATGAACAGTTCACACACAACTTACTTTCGTATAGAGTATATACACTGGCATATGGGCCATACATAAAAACCTGTCACTGCTGTAGTTCATGGGCTTTCCTGGTGGCTCAGAGGTTAAAGTGTCTGCCTCCAGTGCGGGAGACCGGCTACAATCCCTGGTTTGGGAAGATCCCATGGAGAAGGAAATGACAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGATGGAGGAGCCCGGTTGGCTACAGTCCATGGGGTCGTAGAGTCAGACATAGCAAGCTCTGAGCAGACTTGTGAAATGTTGCTCTAATTTCCATGATGTCTCTGTGGGTTGGAAAGGTAGATTAGAATGGGGAAAAGATTGTTAGAGAATCTAGAGGTAGATAAATAGTTATAAACATTAAAAACAGTTTACAGTTAAAGAAACTTGAGCTAGAAATACTTGCCTAGTGGTAGTTCCCATTTACCAAAAACATCTTCCAAAACTAGAAATTTTTATAGTTAGATTCATTTGACTTTATCATTGTCTCATCTCTTAGTCTTGTCAGAAGTGAAAGTATCGCCTTTCTCATCATGGTTCTCCTGGGGATGTATGACACAGGGAGATGCTTCTCTGACAGTGGTGAGCCCAACTAATGGGGTGCCTGAACTTTGATAAATGTATTCAGGCCTAGACTAGAAGCAGATGTGAACATACCATATCCAGGTCTCCTTCTGTCTAGACTGCTCCCTGGTTTCCATTTGACCTTCCAAGGGCAGAAGTTTCTCCAAAGCAGAAGAAATTTCTAAGATGTTTTTCTGAAGCACAGATTAGGAGGAACATGATGGTCCTCCTTTATTGCTTCTAGTAAAAGCTCCCTACTGTTCTGTGTTAGATATTCCATTTTGTATTTAACTTGAGTTATAGCTCTTGACTGGAGGAGTGGAGATAAGGGAGAAAATATCAGAGGCAACACTGGGGGGTATCCCAGGAAGAAGAATAAATAAGATCCAAAATATGAAATATTTATATCCATTCTTTTTAGAAAAAAATATTTTTAAGGTCTTCAGGAGAGTAACTGAAGAGGTAGTTGTTCTAAGTCATATATTATCTTAAATACCATCGCTACATTTGGATCTTTTATTTTGCACACAATGAGCAGATTCAAACAAGAGCATGACAAAATCAGATTTTACATTAGGAAGAGATTGCTGCTTGCTATATAGGGGATGAACTAAGATGAAGATGCTCTGATATACTTGGGACCAAGTAAAGAAGCTGAGTGCTGTAGTCTAGGAAAGAAACTATGATGACCAAAACTAAGGCAGTAAGTACAAAAAGGCTGTGGCTAAATTAGATATTTCTGTGGCAGAATTACTAAGCTTTATTAGAATCAGTGTCTTCCAATAGCTGGCTTGAAAATAAAAGGGATTTTTCATTTCAGACATGTTTGTGTGCTAAGTCACCTCAGTTGTGTCTGACTGTTTGTGACCCTATAGACTGTAGCCCACCAGGCTCCTCTGTCCGTGAAATTCTCCAGGCAAGAATACAGGAGCGGGTTGCCGTATCCTCAACACTCCAGGGGATCTTCCCCACCCAGGGATCAAACCCATTTAAATTTAAGTCTCCTGCATTGGCAGGCAAGTTCTTTAACACTAGCACCACCACACTTAAGATATTGCAGAATATCTAATTGGAAATATATAACTAGAAATAGTTTTCTGGAACTAACGGTGTAACAAGAACTATATTTAGGAATATATAGAAGCTGTTTGAAGCCATAAGAATGAAGGAAAAGATACAGAGCAGGAAGAGAAAGGTTAAGAACAAATTCTAGGTAACCAGACTCCCTCAGTAAAAGTAGAAAAAAATGAATAAGTTAAAACAAGAGGTAATCAAAACCTAGAGGAAAAGGAAAAATGAATAGATAATAGAAATAGATAATAGAAACCCGGCAGATACATTTTAGGAGGAAATCATCACAGTTATCAGTCCAGTACAAAGCATTAAAGTACCATGAGGAATAAGGAGAGAAGGTTACAACTGGCAATATGATATGCTGGGTTTTTTGTTTTTGCGGGTTTTTTGTTTTTTTTTCTTTTGCTTTTACAAAAGCTTCTTTTGTGGCCATTGTGATCAGGCAGAGGCAGATTCTTATAAATTGAGAAGTAATGGAATCTGAATGTAAACCAGTCTACTAGGAAGTTTGTTGGTAAAGAGAATGGGAAGATGGCTATGGCTTTAAACAGAAAGATAGGTATTTTGTTTTTGTAAGACTAGAAGAGAGATTATTTTCTTTTGAATTTTGAATGTGAGAGATTTGAATGTGTCTGGAGATCATGGCATCTGGTCCCTTCACTTCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTCTTTTTTTGGGCTCCAAAATTACTGCAGCCATGAAATTAAAAGACACTTACTCCTTGGAAGAAAAGTTATGACCAACCTAGATAGCATACTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCGTCTAGTCAAGGCTATGGTTTTTCCAGTCGTCGTATATGGATGCGAGAGTTGGACTGTGAAGAAAGCTGAGTGCTGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGGTCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGGATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGTGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACCGACTCGATGGACGTGAGGTTGAGTGAACTCTGGGAGATGGTGATGGACAGGGAGGCCTGGCGTGCTGCAATTCATGGGGTTGCAGAGTCAGACACGACTGAGCGACTGAACTGAACTGAACTGAATGTCACTTGGATAGGGTAAGGTTGTTTTCATTATAGCAAATTCATAGAAAATGGTGGGGATAGCTTTGAAGAAGAACAGACACTGAAAAATAATGGAAAGATTGCGGTCTGAATGGTCTATGGAGACTTTCCTGGTGGTCCTGTGGCTGAAACTCCATGCTCCCAATGCAGGGACCTGGGTTCAATCCCTGGTCGGGGAACTAGATCCCACATGTTACAACTAAAGATCCCATGTGCTACAACTAAGACCTGGTGCAGCCAAATATATATATATATATATATATATATATATGGCTATGGGTGTGTGGGTCCACATTTATATTTAATGGTCTTTTGTTCCTATTTTAACATCCTATCTATAAAATGTCAGGCTTTGACTGAGTCTTCAATTGGATCAGTTTCTTGTATTTTCTTCAATTTCTGCTTTTTTGTGATTGTTCAGTTCAGTCACTCAGTCATGTCCAACTCTTTGCAACCCCATAGACTGCAGCACGACAGGCTTCCCTGTCTATCACCAACTCCAGGAACCTACTCAAACTCATGTCCATCAAGTCTGTGATGCCATCCAACCATCTCATCCTCTGTTGTCCCCTTCTCCTCCTGCCTTCAATCTTCCCCAGCATCAGGGTCTTTTCAAATGAGTCGGTTCTTCACATCAAGTGGCCAAAGTATTGGAGTTTCAGCTTCAGCATCAGTCCTTCCAGTGAAGACCCAGAACTGATTTCCTTTAGGATGGACTGGTTTGATCTCTTTGCTGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCCCAGTTCAAAAGCATCAATTCTTCAGTGCTCAGCTTTCTTTATAGTCCAACTCTCACATCCATACATGAGTGCTGGAAAAACCATAGCTTTAACTAGATGGACCTTTGTTGGCAAAGTAATGTCTCTGCTTTTGAATATGCTGTCTAGGTTAGTCATAGCTTTTCTTCCAAGGAGCAAGCATCTTTTAATTTCATGGCTGCAGTCATCATCTGCAGTGATTTTGAGCCCAAGAAAAGAAAAGTCTGTCACTGTTTCCATTGTTTCCCCATCTATTTGCCATGAAGTGATGGGACCGGATGCCATAATCTTAGTTTCTCTTAACGTTGAGTTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTCTTTAATTCTTCTTCACTTTCTGCCATATGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCAGCAATCTTGATTCCAGCTGTACTTCATCCAGCCTGGCATTTCACATGATGTACTCTGCATATAAATTAAATAAGCAGGGTGACAACATACAGTCTTGATGTACTCCTTTCCCAATTTGGAACCAGTCTGTTGTTTCATGTCCAGTTCTAACTGTTGCTTCTTGACCTGCATACAGATTTCTCAGGAGGCAGGTCATGTGGTCTGGAATTTTCCAGTTTGTTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAAAAGTAGATGTTTTTCTGGAACTCGCTTGCTTTTTTGATGTTTCAGCAGATGTTGGCAGTTTGATCTCTAGTTCCGTCTATCTAGCTTGAACATCTGGAAGTTCTCAGTTCGTGTACTGTTGAAGCCTGGCTTGAAGAATTTTGAGTACTTTGCTGGCGTATGAAATAAGGGCAATTGTGTGGTAATTTGAACATTCTTTGGCATTGCCTTTCTTTGGGATTGGAATGAAAACTGACCTTTTCTGGTCTAATGGCCACTGCTGAATTTTCTGGCATATTGAGTACAGCAGTTTCATAGCATCATCTTTTAGGATCTTAAATAGCTCCACTGGAATTCCATTCCACCTCCACTAGCTTTGTTTGTAGTGATGCTTCCTAAGGCCCATTTGACTTCGCATTCCAGGATGTCTGGCTCTAGGTGAGTGATCACACCATCATGGTTATCTGGGTCATGAAGATCTTTTTTGTATAGTTCTGTGTATTCTTGCCACCTCTCCTTAATATCTTCTGCTTCTGTTAGGTCCATACCATTTCTGTCCTTTATTGTGCTCATCTTTGGTATAAAGTAAAAACATTTGCCCTAAAAGAAATGAAAGTAAAATTTAAGGAGGTGAAGAAGGTGGAAATTACCTGATCTTCTTGAAAGATTAATATTTCTGTATTTGTTGTTGTTTAGTCACTAAATTGTGTCTGACTCTTTTGCATGTCCATGGACTGTAGCCCACCAGGTTCCTCTTTCCATGAGATTTTCCGGGCTGGGCTACTGGAATGGGTTGCCATTTCCTTCTCGAGAGGATCTTCCTAACCTAGGGATGGAACCAGCACAGGGATTAACCTGGTCTCCTGCATTGCAGGTGGTCTCCCCACCATACCAAAGACCAGTCTTCATCCAAAGAAGGTGATGTTGTATATGTGGTGGGATTGGAAGGGTGTCCTCTATTATGAGCTCCTTCCAGAAAACCAAATGATTCCAATTAGACCAACTGAAAACAGCACTTGACATAAAGTGTCTGGAATTAACATATAGCACACACCTGCACGTGTGTGTGTGCTCAGTTATGTCTGACTCTTTGCAACACGATGGACTGTAGACTACCAGGCTTCTCTGACCATGGAGTTTTCCAGGCAAGCATAGTGGAGTGGGTTGCCATTTCCTACTCCGGGGGATGTTCCCGACCGAGGGATCAAACCCTCATCTCTTGCGTCTCCTGCATTGACAGGAATTCTTTACCACTGTGCCACCTGGGAACCTCAGAAAAAGCATAATCTTCTATTTATTTTGGTCTTTACAAAATTCTCTTAATGGAAAAAATTTCAATTCCCTGGAAGACTGTAAAAGTAACCTGGAAATGAAGTCACCTGAAAAATGGTAGAAGGTAGTAGAACAAAATGGTGAATATGTTGTTCAACAAAGTGCTTGGTGAAAATGAAAAATGTGTCTTCTATTTTTACTTAAAAACCAAAGGAACTTTTTGGCCAATAGATCAGGTTCAGGTCATAAAGAACCTTGATTTCTAGAGACCTTGGACTTAATTGTAATGGTATAGTTAGTGGGGAGCCAATGAAGATTTCTGGAACAAAGCGTGTGCTTAAGTGCAGTTAATCTGCCAGTATTGTGTAGGCCAGTTGGAGGGATGGGGAAGAAGAGACCAGAGAAGACGGCTAAAAATTAAGCTATTAAAGTAATACAAAAAAATTAAGCGATAGAAAAAGGGAAAAGTTGAAAGAAAGCACAAAGGTTGAGTGAGCAGGTCTTCAAAAGATGAATATATGCCAAGTTTTAGTAACTAAAGGTGTATACGCCTTGGGGCTCAGTCCGTAACCCAAGACTGGATATGGGTCCAGGTTGACAGACCTGGAACACAGATGAATAACAGATGTCTGATGAAGGATGAGTTTTGTAGTGTTTTAAAGTGCCAGAGGGCATTCCTATGAAGTTGTTTTTCAGTCAGATCCTTGATATACTTGGCTTCTGTGACACTGCTCTCTTGATCATTAACATCTCTGAATGTTCTTTACAGATACCTACTTTTATCTGCCTGCTGTATATATTGATAGTACTCTGAGTTACATCCTTAAGCCTTTATCATTTTACTTTACTCCAGGCTTTTCTAGCTAGATTCTGAAGCACAGGCTTACTAAGTAGGATCCCCTCTACCCTCAGCTTTCAGCAATAGGCTTGGAGCAGACTTCCTGTTTATTCAGGTATGCCATACATTGATCATCTTCCACTTATTATGGCATGTAAACCCCTTCATGGATCACAGCCTTGTCGTGGCGAAGGGGCTTGTGTAACTCAATGAAGCTATGAACCATGCCGTGCAGGGCCACCCAAGACGGACAGGTCATAGTGAAGAGTTCTGACAAATTGTGGTCCGCTGGAGGAGGAAATGGCAACCCACTCCAGTATTCTTGCCGTGAAAACCCCAAGAACAGTACGAAAAGGAAAAACGATATGACACCAGAAGATGAACCCCCCGGGTCAAAATGTGTCCAGTATGCTACTAGGGAAGAGCAAAAGCCAATTACCAATAACTCCAGAAAGAATGAAGCAGCTGGGCCAAAGCAGAAATGACACTCAGTTGTGGATGTGTCTGGTGGTGAAAGTAAAGTCCAGTGCTCTAAAGAACAATATTTCATATGAACCTGAAATGTTAGGTCCATGAATCAAGGTAAATTGGATGTGGTCAAGCAGGAGATGGCAAGAGTGAACATCGACATCTTAGGAATCAGTGGACAAAAATGGACAGGAATGGGTGAATTTAATTCAGATGACCATTATATCTACTGCTGTGGGCAAGAATCCCTTAGAAGAAATGGAGTAGCCCTCATAATCAACAAGAGTCCGAAATGCAGTACTTGAGTCAATATCAAAAATAACAGATGTTTTCGGTTCATTTTCAAGGCAAACCATCCAAAATGTCAGCTATACTTTATGTTGACTCCTCCCCACCCCCCAGCCAAAAAAAGAAAAAGAAGAAAAAGAAATATAGGGAGGTAAAATTTCCAGTGAAAAATGTTTATTTTAGTGTTACAATTCTCCAACTAATGATACCCCAAAATTAAGAAGCATAAAAAAAACTGGTTATTTTGTTTTCATAGTTTCTAACATAGAAAGGGGGAAAATGTCTAATTGTGGAGAATCAAGATGAAATATATTAACTTGACTGTACTGTTTAAAAATGTGTGCATCTAG
Seq C2 exon
ATGATTCTGAACAACTTCTGAATGGCCTAACTGTGATGCCTCAGTCCAGTGATAATGACACAGTGATGTTAGAATCAGAATATCAAGGTCAAGTTCCAGTGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003724:ENSBTAT00000017938:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]