MmuINT0025752 @ mm9
Intron Retention
Gene
ENSMUSG00000029279 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr5:107799174-107805381:+
Coord C1 exon
chr5:107799174-107799348
Coord A exon
chr5:107799349-107805283
Coord C2 exon
chr5:107805284-107805381
Length
5935 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TAAAGAGTATGTGCTTCTAGGTG
3' ss Score
4.11
Exon sequences
Seq C1 exon
CAGATACAATCTTCTGTGCAAGACATAACCTCTGCTGAAGCTCCCCTTGCTCAGCAGAGCACAGCACCATGCGGAGCCCCAGGGAAGCACTCCCAGCAGATGCTTGGTTGCCAAGTGACACAGCATCTGCAGGCCACAGAGAACACTGCATCTGTGCAGACTCAGCCTCTTTCAG
Seq A exon
GTAAGAAACACAAGTCAGCCATTCTGGCTGAGAAATGGACTCTGTAGTCCACATGTGTCTGGAGGCACGTGTGGGGACACAATGGTGTTGTCAGTGTTACACACCCAAGCATCACTGAATGAGCCAGGTCCCAGGAAACTGCTTTATATACATGAGCACTCCTAATATTTGTGTATCTATACTCAATTTGTTAGAGTGTATAGATGATGAAAAATCTCTTTTACTACCCAAGTTTAACCATATTCTAGCTACTTGGAAAATGCTGCTCTACCACCATGTGGAAAGCAAGCTGCAGTGGTGTGGAGAGAACAAAGCAGGTTTTGTTTTCCTTTGTCAGAGTTGCAGCTCCTCCAGCCTCTCCCTGACCTCACTATGTACCCAGGGAAGGCCTTGAGCTGATCCAGCCTGGGAAGGGCACTGGGGTCTTGATGCTCTTGTTGCCGCTGGTGTTGGGCTCCATGCTACTCTGCTTTGTCTGTAACTCAAATTACAGCTCATCCTTGAGGAGAAGAAAATGGAGATCAAGAAAAACATGGATGGGGACTAGGCTTGTAGCTCAGTGGTAGATTGTATTGTTGGCATATATGAGGTCTCTGGTTTATTTCCCAGTACCCACCACCCTCCAAAATACAAAAGGCCCTACAAACCAGAGAGAAAGAGGCAGGTGCAGATTGTCGAGCCAGCTAAGGCAGGGTGAATTGTGTCCAGAGGGAGAGCATTTGCATCCTGTGAGAAGAATAAGAAGAACATGTAGCTGTCCTAGGTCACAGTTTCTTTCTCAGACTACCATAGCATTTCAACTTTTAATTTTTATGCAACAAGGAACTTCAAACAGAAACATGTCAAACAAACAAAAAGACACCCTCACCCCCCCCCCCTGCAAAAAAGAAAAAAAAAAAAAGAACTACAATACTTTAGGGGATGAGGGAGTAGCTTATTGGTAAAACACTTGCCTGACAGGCATGAGCCTGAGGTTCAGAACCCAGCACTGGGCAAAACAGCAATAAAAAGTTTATAAAGAAAAAATTTGCTGCTTACTAAATTGTGGGTTAAGTTGAAGATACTCTGATTAGTCAGTACCATGGAAGAAAGCTGAGTTTGTCGTCTAAGTCAAAGTTACTACAACCAAAACTAATGCTATGAGCATAGGAAGGTAGTTTTGTAGCAGAAGGTGTAAGGCTTGAGAGGAGATAACCTAACAGCTGGACGGGAAGTACGAGGTAGAGCTCATTTGGCTATGCAGCTGGGTGAGTAAAAGCAGAAATGGGTATCTGGGACTAAAGAGTCTAACATCACTTAAGCATTGCCACAAGCGATTAAGATAAAATGGATGTAATTTAGGAAACCACGAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGACAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGACAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGACAGAAGGAAGGACAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAATAAATATGCAAACTAAGAAGAGTAGTTCTAGGAAAGAAAATGTCAGTAAAGAGATTAACAAATCAAAGCACTGGTCCTGATGCTGCACTGCAGCGTGAGGCTTGTCTAAGCTGGAAGTTTGAGGCCATCCTGATCTTAAAAGAAGAAGAGGAAAAATTAGAAAGACAGGAGACAAAAAGGAAGGAGAGGTAATGAGAGGAGAGAGGGCTGAGAAGGGCCACCACCTGGGCCACTGGCTGCAGAGGCTGCAGTGGACACAGGGACAGAGGGGTCTAAACAGACACTGGCTGCAGAGGCTGCAGTGGACACAGGGACAGAGAGGTCTAAACGGACAGCAGAAGCGCTGCTCTTCCAAGCTTACGTAGGAGTTGTAGCAGCCAGGGTTCTACAAACTGCGTAGACCCTGGTGGATGCCTCAGTGAGGCCAAGGGGAAATAGCTGGGTTATTAACACAAAGACAGAACTTTTTAAAGCAGCCATGAGAGTTATTTTTTTCAGTTGGAAAGGTCCGAATGTTCAAAGGCATTAATAAAGCCCGAGCCAAGTAGGAAGAACCTGCTGCTGTCTAGCGTGCGATTGTGAGCGAGCAAGTGGGGAGATGGTGGCGCCCTTGAAAAGAAGGAAGAGGCTAGAGCGGCGTCTAGATTCCCACTTAACCCTGGCCTTGGCAAGGCAAGCCTGATGCCTAAACCTTCAGAAAGGGGCACCCTGCTGTGGACATCTGAGCTGGACACTGCAGCAGATAAGACTTCCCTGTATGCATTTAGACTGAGCAGTCTGGATGGAAGAACAGAATGTTCAAAAACTTTTAAGAAACTGACCTCAACATGACTGGTTTGATCAACAGGAAATGTAGAAATAAGTATGAACAGGTCGGCAGGGCAGATCACAGAGACCCTAGCAGCTGAAAGGCTTTGGTCTTGGGTGAGAGTGCAGTTAGTAGAAAGCTGATGGAGCTCTGAGCAAAGACGGTGCTTAGGGCAGTTAAACTTCCTGTAAAGGGAGGCTAGGGGTAGCTCTTGTAGAGCAGAAGAGGAGACAATGAGATGTTGTGGTGAGTGCTCCAAAGAGAAAAAAATAAAAGGTTGAAAGACTCTTCTCAGGCAGGCTGAGCACTGCACCCACAAGGCACTTGTGCTGTGTTAGTTATGGTAGGTGGGCCAGCATCGGTTCATGGGAAGGAAGCTCGCAAGGACTAGAGGTGAGGACTCCAGAGAAAGGAGAGCTATGGTATTTGATGTGTCAAGTGATAACTTTTGTGGTCGTGCTGCTCCCAGTTGGACCCTTCCTGCCATCCTAGGCTTCGATGACCCTGTTCTCTTGATTGTCCCACCTCTCTGAATGTTTCCTGCAGTCACCTTTTGGTATGACTGCCTTTAGATAAGGTTGATTGATAGCTTTAACTTTTGTTTTCTTTTGAGACAGGATTGTGCTATGTATATAGCCCACATATTCTCAAACTCATAATCCACCTACCTCAGCGTCCCAAGTGCTGGGGAAACAGGTGCGTGTCACTGCCCCCAGCCAGCTGCTTCCCTTCCTACTTAACCACAGAGCTTCCCACCCAGCCTTGCTGAACAAGTCCTGATCTTCCCCTCAAAGCAGTGTGCTGACCACAGTGAGTCTCGATAGCATGAGACGGAAAGGCTGAGAGACAACCTGATGTAGACTGCATCTGGGAAATCTCTGGGTTTTTTTTTGTTTTTTGTTTTTTCTGTTACTTGCACAATTCAAATGTACCTGGCCCCAGGCATACTTATACAACACTAGAGCATCTTTATTTAAACATCAAGTAACCATTGCAAACCATGTGAAAACAAAATTCTCACTTTTCCTTTTTTGGGTTTTTGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATACCCGGCCAAATACCCACTTTTCAATCCCCAGATTTTAAAAAGGGTTTTACTTATTATTTTAATTCTTATGTCATATGTGTGTTGTCTGCATGCTTGTCTATGCACCATGTACATGCCTGAAGCCCACAGAGGCTGGAAGACAGGCTTAGCTCCTCTAGAACTAGAGTTATGGATGGTTGTACATCATGTGTGGGTGATGGGAACTGAAAAACAGCCAGTGCCACCTCTGCAGCCTTTCAACATCCAGATCCTAATCTTCCCCTTTTATTTAGTGATAGCAACACTGCTACCTCTTATCAACAAGTTGAGAATCATTCTAGAGTTTCTACTTTCCACACAGACTCTCCTTCCTGCCTAAGTCTGGTGGCAGCTCAGAAGGGTTGTAGTTCTGAACTTTGCTTTCCATTCCACGTGAGTTTAAGAAGTGCACGCGTGTTGAGTGTCCGGGATCTTGTGAAGTTTGGGTGTGTTGGGCTGTCCAGGGTTTAAACGTAAGATCTGTTCTTTAACCCACACACTCCTCCTCTGACAGTGTCACATTCTCTCTCTGTTCTGTTTCTAGCTCTACCCTAACCTCAGCTTGAAGACAAGCATGATTTAGTCAAGGGACTGAAGGGAGGTAGAAGCTTAGATATACATCCCCACAGCATTAGATGATCTAGAATTTTATGAGTTTGGGTCAGCTAATTTTGCTTTTTCTTCTCTGTCCTTTAATCAACCAATCAATACTGGTGAGAGTTCAAACGGGATTGTTGTATTTTGTGTCTCTGTCCTGTCACATCCCCTCCAACTCCACTTGAACATCTCTCTGCATGTCTCCTCCCAATTTCATATCCTCCTCTTTTATTAAAAACCAAATCTGCCAGGCGTGGTGGTGCACGCCTTTAATCCTAGCACTCGGGAGGCAGAGGCAGACGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAATCCTGTCTCAAAAACAAAACAAAACAAAACAAAAACCAAATCCACAGAGTCCAGTCAGTGTTGATTGCTGTGGGATGCACACTGATGTAGAGCCTCCACTACAGCCTGGGCAACCCACCAGTAGCCATATTGCCAAACAAACAAGGACTCTATCCCCAGAATCCATCAACTGCCAATAGCTAGCTCCTCAGCTAGGTGTGGGGCTTGTGAGCTCCTCAGCTAGGGGTGGGGCTTGTGAGCTCCTCAGGCAGGGGTGGGGCTTGTGAGCTCCTATTCTCCATGATGAAATGCTGACCAGCTTGATCTTGTTCAGATAACTACTGTGAGCTCATGAATGCAACATCCATGTCATGTCTAGAAGACAGCCCTTCATTGTGCTCCTTCCTATCCCCGTCACTGCCTCTTCTGCAGTGCTCCCTGAGAGGGAAATTGGCATGTGTCCCACTTAGAGCTGAGCACTCAGTCATGCATTCTCAGTACTTTGAACAGTTGCATGTCTTTCTGCATTGCTGCCCACTACAAAAAGATTTTCTGACCAAGATTGAGAGCACATATCTATGCACAAAAACATAAATAATGTGAAGACATTATGACCGTTCAACAAAATATCAGTAGGTTCTCCTCTATGATCTTTATCCCCAGCCATGAGCTTTTGACCAAGTTTATACTGCAAGGTATGAATTCCTCCTGTAGAACAGACCTTAGCTACAGTCACCCCCATGCCAGTCACAGCACCAGCTGGCACATTCTGCCTGGTAGGTTGGTATTATAGTATGCATTGTCCTAGGCTCTGCATTTTCATTTTCACATGGACTGTCCTGCCTCCCTAGAAGCCGTACATTGGCTTACCAGGGGAAAAGCAGAATTTTTATGACTAGCAGCTTAATCCAGATCCACCTCTGGAGCGGAATCAAGTCTACAAACTTTAGAGCTCCATATCATGAGAACAGACCTGCTCAACATCATGGTATGTCAACCCTTCATGGTTCCAAAACAAAAATAGAAAACAACAACAACAATCAAAGGTCACTTCAAGTGAGAAATGTTTACTTTTATAATATAACCCAACAGATACCATAATAAGGATGTATAGAAACTTATTTTTCTTATTCCATATATGTACATATATATGTACACAGACATACATGTGTGTATGCGTCTCCTTATTTTGGTTTTTTTTTCTCTTTCCCTAATCAGGATCTTATAAGTAGTACAAGCATACCTTAAACTTCTTACCCTCCTGCCTCAGCCTCTTGACTGTTGGGATCAAAGGCATGTGCCACTATATCTGGCTATTTTATATTTATGATGTCTGACATGGAAGGAAAAAGAAATTTAAACTCCAGATAAGTACCCTGACGTATTTGTGTTATTCCTTTCTAAAGAGTATGTGCTTCTAG
Seq C2 exon
GTGATTGCAAGCGAGTATTGCTTGGCCCCCCTGTGGTGCACACCTCTGCTGAGAGCCTCACAGTGCTGGAGCCAGAATGCCATGCTCCCGCGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029279-Brdt:NM_054054:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.818
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: