BtaINT0027256 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030166 | BTBD17
Description
Bos taurus BTB (POZ) domain containing 17 (BTBD17), mRNA. [Source:RefSeq mRNA;Acc:NM_001205464]
Coordinates
chr19:57717495-57719764:+
Coord C1 exon
chr19:57717495-57717579
Coord A exon
chr19:57717580-57719487
Coord C2 exon
chr19:57719488-57719764
Length
1908 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCTGTTCCTTCCTGCTGCAGCCC
3' ss Score
10.09
Exon sequences
Seq C1 exon
ATGTGCAGGCTGGGCTCTGCCAAGCCTGGGTCCTGGGCCAGCTTCTGGGCCATGCTGACTTTGGTGGGCCTGGTCACTCGTGCAG
Seq A exon
GTGAGTGGGCAGTGGGCAGGGAGAAGGGGCAAGACCTTCGGGCTCCAACTGCCCATGGCCAGGAGGGGGCGGTGTCCAGCCGGCCGGGCCAGGCACAGAGTTGATTTGATCAGGCAGCTCCGTGGAGGAGGGCAGCTGGCCTCCGAGGGCAGGAGGGCTGGGCAGGCAGGCGGCTTAACCACAGGAAGACCCTTCCACTGCCCATTGTCCCTGGCAGCTGGGCCCAGGCTGGGGAGAGTGGGATCCATCAGCGTTTGGAGCCTTCACTGTGACAGCTTGGGGGATGGCGGGGCTGGAAAATAACCAGGGCTCCTCTCTTAGCCTTTCTCCCTCCCTCTATCTGCCTCTCACCCATACACAGAGGCTCTGCTTTCCTGGGAGCCTCCTCAAGAGTCCACATGGGCCCTGGGACTGTGTGTGTTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCGCGCATGCACACATACACGCACGGCGGGGCGGGGAGGGGGGGCTCATCTGCTCCCCTGGACTCCTCAGTCCGTGTTCCACTTGGGGAAGCTGCTGGCGGTGCTTTCTGTCACTGAGTTTTCCATCCGTAAGCACGTGTCCCCGTCTGACCCTCACGGTGTCCCTGGAAACAGGGGAGGAGGGTCCCGCGTGCCTCGCCTGGAAGCAGGAGGATGCCAGTCCCAAGGCGCAGGTGCCTCGAGAGTCCCGTCCAGGACCCGCTCTTTCTGTGCTTTCTCGGGTCCCCCGGAAGGCCAGTGTAGACCCCTGCCTCCCAGATCAGGATCCAGGAGGGCGGCTGGGCCTGCACCACCCGCCCAGGCTGCAGCCCCCTCCCCTGCTCCGCCCCTCACCTCCCACTCAGAATGTGGGCAGATCCCCTCTGCCTTCCCAGCACCAAGCCCAGCCTCTCCCAGGGCCTTGGGAGGGCTCCTTATCACTTCCTCAGGGAGCCTGTCTCTGATTCCTGCACCTACAGGAGCCGCCACCCGTCACCGCCCTTACTGGTCACAGCCTAAAACCAGAGGCTTATTTGTGTATTTATTGCCTAAGAAGCTAAGTTGTGCTTTTATGAGTGTAAGGAGCTGGTTTGTTTTGTTCACTGTGCTGGTTTGAGCTTCCAGGGGAGTGTCTGGCTTATTGTAAGTGCTCAATAGATCATTTGTTGGGGAATGCACTGCTTTGGGCCAACTATTCTCTTCCAAGGGGTAAGGTGGGCAATTCTTCAGGAGGCGAGGGGGTGGGGACCAAGAGGTTCCTCAATCCTCGCCTAGGCGTCTGACATCATGGAGATCAGCTCTAGACATTAAATTTTTTTTTTTGGATGTGTTGGGTCTCTTGCTGTGTGGGCTTTTCTCTAGTTGCAGCAAGCAGGGGCTACTCTTCATCGAAGTGTGAGGGCTTCTCACTGCAGTGGCTTCTCTTGTTGCAGACCTCAGGCTCAGTAGTTTCAGCTCCCCGGCTCTAGAGCACAGACTCAACAGTCCTGGAGCACAGGCTTAGTTGCTCTGCGGCACGTGGGATCTTCCTGGATCAGGGATCAAACCTGTGTCTCCTGCATGGGCAGGCAGATTTTTACCACGAAGTCACCAGGGAAATCCAGCTCTGGACCTTTTGTCCCATCCTGATTCATGACCTCTCCCTGCCGGGAATCCACCCCCAGCCCCTTCCAAGAGCATCTTCTCAGGGTCTGCTCAGGTTCACGACTTTCCCTGTCTAAGATGTGCTTGTCTGCACACACATGCATCCACGCACTTCACAGGCACAAACGGGAGCACACAGCCTCCCCAGGCTTCCCCTACCCTCTGCCCACATCCAACCACAGGCATCTCCAGCTGGTCCGTCTGCAACCCCAGAAGGCTGCCCTCTCAGGCTGCTCTGTTCCTTCCTGCTGCAG
Seq C2 exon
CCCAGAAAGCTGATGTTGGCGGGGAGTCAGCAGGCACCTCCATCAACCACTCCCAGATGCTGCTCCAGCGCCTGCAGGAACTGCTGCGGCAGGGCAATGCCAGTGATGTGGTGTTGCGGGTGCAGGCCATGGGCACCGACGAGGTCCGAGTCTTCCATGCCCACCGCCTGCTGCTGGGACTGCAGAGTGAGCAGTTCCGGGAGCTGCTGAGTAACCAGAGCGAGGTGGTCTTGCAGGAGTCCCGGGACTGTGCTGCCGTCTTCGACAAGTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030166:ENSBTAT00000042549:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0065126=BTB=PU(61.8=73.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGCAGGCTGGGCTCT
R:
GAAGACGGCAGCACAGTCC
Band lengths:
348-2256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development