HsaINT0018985 @ hg19
Intron Retention
Gene
ENSG00000204347 | BTBD17
Description
BTB (POZ) domain containing 17 [Source:HGNC Symbol;Acc:33758]
Coordinates
chr17:72356108-72357958:-
Coord C1 exon
chr17:72357874-72357958
Coord A exon
chr17:72356385-72357873
Coord C2 exon
chr17:72356108-72356384
Length
1489 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGTGTTCCTTCCTGCTGCAGCAC
3' ss Score
9.96
Exon sequences
Seq C1 exon
ATGCCTAGGAGAGGCTACTCCAAGCCTGGGTCCTGGGGCAGCTTCTGGGCCATGCTGACCTTGGTGGGCCTGGTCACCCATGCAG
Seq A exon
GTGAGCGGGCAGTGGGCCAGGTGCGGGGCAGGGTGGAGCGGCAGGTCGTCCCAGCCCTGGCTGCACGCGGCCGGCCAGGAGGGGGCGGTGTCCAGCTGCTGGGGAGAGCACGGGGTGGACCGGACAGCTCCACGGACTCATCTGTCTGAAGGAAGGAGGGGCCTGGCAGGCAGGTGGGCAGGGCTCTTAAGGACAAGAGGACCCTCCATTGCCCATTGTCCTGGGCAGAGGCTGAATGGGGACGCCATCAGCATTCAGGTCCTTCAAAGTGACAGCTGGGGAAGGCCGTGCTGGGAAACATACTACCCGCTTCTCTTTCACCCTCCCTTTGTCCCTCGGCCTCCCTCTCTCATGCACAGATGCTCTGCTCCTGTGTGAGCCTTCTCTCCTGTGTGCACCACGGGCCTGCATGTGCTGTGCGTGCACATGTGGCTGCGGCCCATCTGCTGCAATCAGGCCCCCGCCCGCCTCCCTCTGCGAGGCTCCCCTCGCTGTTCTCGGCTTGGGAAAGCTGCTGACAGTTTCTATAACTGAGTGCATATCCCCATCTGACTGTCGGGGCATCCTGGAGCATAAGCAAAGGGCCGGCCTGGCCAGCCTCAATGCTCAGTTACCCAGGAAGTTCTATTCCAGCACCAGCTGGCCCTTCGCACTTTCTCCTGTCCCCTGCTGGCCACCCCAGAAAATCGGCTTCTGTCTCAGAGATCAGGACCCAAGAGGGCAGGGCTGGGCCTGGAAAACAGCTTCCCTTCCACACCCGCAGCCTCGTCTCACACCCGCCCCTCTCTCCTGCTACTGCTGTGGCCTCCCTAATGCTCTCTCTGCTCCCAGTACCCCAGGCCCATTCCGTTCAAGGGCCTTTGCGGGGCTGGAGCCTGCCTTGACACTGGTTCCCTGGCTGGCTCCTTTAAAACTGGAGTGCTTATTTGTGTGTGTCTTACCCGTTTGATATGTCAATTCGTGCTTTTATGAGCATAAGAACTTGGCTTGCTTTGTCCACTGCCACATCCCAAGCTCTTAGGAGAATGTCTAGCATATAGTAAGTGCTCAATAAATATTTGTTAGTGAATGCACCACTTCTGACTACTGCTCCAAGGGGTTAGATGGATAATTCTTTAGGAAGTGAGAAGGGTGGGACCACGAGTTTCCTCAACCCTTGCCTGGGGGGCTGGCAGCATGGAGATGAGTTCTGGGCATGTTGTCCTAAACCTGAGCACAACCTCCCCCTGCCTGAATGCACCCCCTTCCAAGAGCATCCTCTTGGGGTTTGCATTGGCATGACCTTCCCACCCAGGGTGCGTTTGTATGTGCACCGATGCATCCACGCGCCTCGTGGGCACAAACAGGTATGCACATACAACCCGCCTAGGCCCACCTTGCCCTCTGCTCACACCCATGCATATGTCTCCAGCTGGTCCCTCTCCACCCCTGACTGAGGTTCTGGGCCCGGGCACCTTCTCAGGCTATGCTGTGTTCCTTCCTGCTGCAG
Seq C2 exon
CACAGAGAGCCGATGTTGGCGGGGAGGCAGCTGGCACCTCCATCAACCACTCCCAGGCGGTGCTCCAGCGCTTGCAGGAGCTGCTGCGGCAGGGCAACGCCAGCGATGTGGTTCTGCGGGTGCAGGCTGCGGGCACCGATGAGGTCCGGGTATTCCACGCCCACCGCCTGCTGCTGGGACTGCACAGTGAGCTGTTCCTGGAGCTGCTAAGTAACCAGAGCGAGGCGGTGCTGCAGGAGCCACAGGACTGCGCCGCTGTCTTCGACAAGTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204347-BTBD17:NM_001080466:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0065126=BTB=PU(61.8=73.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTCCAAGCCTGGGTCCTG
R:
GAAGACAGCGGCGCAGTC
Band lengths:
334-1823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)