DreINT0038568 @ danRer10
Intron Retention
Gene
ENSDARG00000102472 | btbd17b
Description
BTB (POZ) domain containing 17b [Source:ZFIN;Acc:ZDB-GENE-091204-214]
Coordinates
chr3:12735817-12739221:-
Coord C1 exon
chr3:12739144-12739221
Coord A exon
chr3:12736100-12739143
Coord C2 exon
chr3:12735817-12736099
Length
3044 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTCTGTATCTCCTGTAGCAGCAT
3' ss Score
3.24
Exon sequences
Seq C1 exon
ACATGGTGAAGTCTGGAGGAAGAAGTGTTCCTGTCGTGGTTTGTCTGGCCAGCCTTTGTCTTGCGCTTTGTGCTGGAG
Seq A exon
GTAAGATGAAAATTAGGTTTATTTATTTTTTAATAGTTGCTTGATTTTTAGATGTGTGACTTTTGTATGTTATGTGAGAACATACTTCTTAAAAAACGTAACGTTTATCTCAAAACATTCAGCCCTGATATGACCTGCACAAATGTTAAATATTTATTGTATAGCTATCCATTTTGATAGTTTTTTGAGGAATGATACAATAAGAATGATTTATTTTACATGCTTTTAAAGAGTAGTTCGCTCAAAAATGAACATTTACCGGCTTTTTACTCACCATCAACTGTCTCCTTGAGTTTCTTTCCTCTGTTGAACACAAAAGAAGATATTTTGAAGAATGTTTGAAACCTGTAACCATGTAGAACAAATAAATACCATGAAAGTCAATAGTTACCGGTTTCCAGCATTTTTCAAAGTATCTTCTTTTGTGTTTAACATAAGAGAGTCTTTTAAAACCTTCAAAACCTTCAATACCAGGTTTTGAACAAGTAAATGATGGCAGAAGTTTCATTTTGCCTGATATGTATCTTTAAATGTCTCCCTTTACACATCTATACAGACATATTGTTGCATATTACTGTACATTTAGTAGCAGGTGACAAGTAAATAGTGAGTAAATAATGACAGAATTTTCAGTTTTGGCTGAACAATCCCTTTAACAGTAAATATCTGTATCTAAAGGAACCACATTTATCTTAAAAAGGGACAATTCACCCAAAAATTACAATTCTGTCATAATTTACTCGTCGTTTACTTATTTCAAACCTTTATGACTTACTTTTTTTTTGGTTGAACAAAAAAGAAGATAATTAGAAAAATGTTGGAAACCTGTAAACATTGATTTCCATAGCATTTGTTTTTCCTACTGTGGAAGTCAATGGTTACAGGTTTTCAACTTCCCTCAAAACATCCTCAGTTGTGTTCAACAGAATAAAGAAACTTACAAAAGTTTGGAAACACTTAAAGGTGAGTAAATAGTGATTAATTTAGCATTTCTGGGATGAACTATCCCTTTAAAGATACCTTCAATAACAGGTTTTAAACAAGTAAATGACTGTAAAGGGGCCCCTCACCACCCCTTTACACATTCATACAGACGTATTGTTGCATTTTACTGTAAATTCACCATGTTTAGAGGAAATGCAGTAGCTTTTCAAATGTCTGAACTGATCAGGTGCAAGTGAATGAGTCACATGACTTCAAGAGCAGCAGTCAGAGCCTTTCATTAACAAGGTCTATGTGATTTTGTATTCAGGCTTGCACGTTCCTCGCTTTTTCCTCAGCCTGAATTCGGGGTCTTTTGACATTGAAAGTGCCTCTGGAAGCTGAAACGCAACATAACCTCTCAAATGCTTAATTTGATGTGATTTAGATTTCTTGAAAGAGCAAAAAGAGATGGATGGAAAACATATTTTCAGTGTGCACTTTAAATGTTAACACCAGTTACTAATGAGAGTGGCTACAGTTGTGTGTCTCTTACTATGAGTGATTGTCTCATCATTCAATAACTGATAAAATATGCAGCGCAAATGCATGCAGGAACATTGAAACCTCTGATAAAGTACATTGTTCTTGTTTTTGAAAGTGCAAAGTTATTCTTTGGAAGTTTTGAGGCACTTTCTGTCTTGGGTGACTCTTTTTTTAACACAATCTTCACTCTCAGAAATAAAGGTTGCAGTAAGTGTATATATTAGTACCTAAAGAATGCTTAATAACACATTAAAGGGATAGTTCACCCCAAAATGAACATTTACTCACTATTTATTCTCCTTTAAGTGGTTTCAGACCTTAATGAATATATTTTATTTTTCCTGTTAAACACAAAGGAAGATATTTTTTAAATATTAGAAACCAGTAACTATTGACAGTAGGAAAAGTGAAGTTTCACAAACTAATTTCGAGAGGAGCATGTGATATGATTGAGCACGACTGGCTGCTCATCTGTAATCAGTTATAATCCAATCAGAGTAATCCTAGTTTACTATAAATGGATCGTTTTCTCCTTATTGCTCTATCTTCGTTTTGGAAGAATCCCACCTTCCACCCCGGCTCCTCCTTTTCCTCCCTTTTCTAAGGGGAAGCTCTCCATACCTACCTGATCTCAGATCCTCTTATATGCATTGCTTATTGACCAGGTGGGAGCCTTGGGCTCAAGTATCTCCAAGCTCAGGGTTCTCTCCTGGGACAGCAAGCCAAACCTGCTATAAACGCAAAGCATATCTAAGTGGGAGCTCTTGAAACTATTTTTTTTTAATCTGATTAGAGTTTTCAGGAGCATTTTTCAAAATAACTTCTTTTATGCTCAATCACAACAGAGAAACAGGTGACAAGTAAATGGTGAGTACACAGTGAGTAAATGATGACAGAACTTTCAGTTTTGGATGAACTATCCCTTTAATATGAATATCTAAAGGAACCACATTTATCTTTAAAAGGGATAATTCACCCAAAAATTACAATTGTGTCCTCATTTACACATCATTTACTTGTTTCAAACCTTTATGGGGTTATTTGTTCTGTTAAACACAAAAGAAGATATTTAAAAAAATGTTGCAAACCTTTAACCATTGACTTACATAGTATTTATTTTTCCTGCTATAAAAGTGAATGGTTACAGGTTTTCAACTTTCTTCAAAGTATCTTCTCTTGTGTTCAACAGAAGAAAGGAACTCATAAAGGTTTGGAAACACTTAAATGTGAGTAAATAGTTCTTAAATTTGCATTTCTGGGGTGAACTATCCCTCTAAAGATAGATATTAGTGGCAAATAAATGAATCTTTTGAAAGGTTATCACTCCAGTCACAGCTTTTGTACCTATTTCTACACTCAAAAATGACTTTTGTTGTTAGTTCAAACTACTTCTTTTTTCTTTTTTCTATTTTTTCCATAAAAGTTTTTTTTCTTGGGGACAACTTAATGGTTCAATCCACTTAAATTTGTAAAAACAATGACGTCAACTTAATAGATTTGTGTTGAGATAACATGAAGGAATTGTGTGTAATCCAGCATTTTTACATGATGTCTATCTTCTGTATCTCCTGTAGCAG
Seq C2 exon
CATTAAAGCCGGATGTTCTACTCGACAACACGGCCACCACACTGAACCACTCAATGGCACTGGTGCAGCGCATGGAGGCTCTGCTGACCCAGGGAAACGGCAGCGATGTGGTCTTGCGCGTTCAGACCGTCAACACGGATGAGGTGAAGGTGATCCAGGTGCATTCGCTGGTGTTGACTTTGCAGAGTGACGTGTTTGATGAGCTCCTGCAGACCCGTAACTCCACCGCCATGGTCCTCAAAGAGACTTCAGACTGCGCTGCCGTCTTTGAGAAGTTCGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102472:ENSDART00000159934:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0065126=BTB=PU(62.5=72.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]