MmuINT0026165 @ mm9
Intron Retention
Gene
ENSMUSG00000000202 | Btbd17
Description
BTB (POZ) domain containing 17 [Source:MGI Symbol;Acc:MGI:1919264]
Coordinates
chr11:114655164-114657206:-
Coord C1 exon
chr11:114657078-114657206
Coord A exon
chr11:114655441-114657077
Coord C2 exon
chr11:114655164-114655440
Length
1637 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CATGTCCCTTCCTGCTGCAGCTC
3' ss Score
10.51
Exon sequences
Seq C1 exon
GGACTTGACTGTCCCTCCAGTGGACTTAGGGACAGAGCACAAAGATGCTTAGAAAAGGTTCCTGCAAGCCTGGGTCCTGGGGCAGCTTCTGGGCTATTCTGGCCTTGGTGGGACTGGTCACTCGTGCAG
Seq A exon
GTGAGTGGAAAGTACGGGGATCAGGTGCCTGGTAAGGAAAAAGGTAAGGGTTGGGGGCAGGAACTTCTGCTAGGAGCTACATAGAGCTGGCCAGGAGGTGGAGCCAGCCAGCCAGCCCCAGAGAACACGGAGAGACTGGACCTCTCCAAAGACAGAGAGAAAGGGGCACATAGCCTTCCAGGGAAAGAGGCTGGGCAGCAGGCAGGAGTCTTAATGACAAAAAGACCCTCTATTGTTCATTGTCTCCGACAGCTGGGTCCAGGCAGAGGCTGCAAGAGAACGCCATCAGCATTTAGGTCTTTCGGAGTGACAGCTGGGGAGGCGGGGCTAGGAGGCGGGGCTGGGAAATTCACCACCAGCAGCTGCTCCCTCTCTCCCCTGCTGGGTCTCCCTCTCCCACACACAGATGCTCACTCTTGTGAGCCTTCCTTTCAACGATCCACACATAGGCCCTGTGCCCACTCTGTGTGTGTGTGTGTGTGTGTGTGTACACAAGAGCTGCCTGCTGGTGCCCTTCTGCAATTGTCAGACTATTAACCGCCTGCTTTTCCCAGTTTGCAAGGCTCACTGCACTGCTCAGTCTAGGGGGGTGTCTTTTCTATAACTCAGCATGTGTCCCTATCTGACCCCAGAGCTGCCCTGAGAACACAAGAAACAGGCCTCCCTGGAAGGGAGATGCTAGCTTCAACACTGTTACCCCTGGAATCCTATTCCTTCACTGTTCACCCAAGTTACTTCATTGGGTCCCTTACTGTCTCACCGAGTAGGGCCGGGGCAGTGCTCCTCATTGTGGAGTGGTGATGCAATCCTGTAATCCCAGCACAAAGGATGGAGGAGGGAGAAGGATCAAGAGTTCAAGCCCAACCTCAGCTAATCATGAATTCAAGGCTAGCCTGAACTATAAGAGACCCCATCTCAAAAAACTAAAAAGAGAACAAACAAACAAACAAAGACAGAAAGAAACGCTATGCCTGCTGTCCCTGGCCCTGAGCTCCACCTGGTCATTCCCGCCCAGGTCTTTAGGGCTGGCTGTATTCCTTTGTCTCTGGCTGGTTCCAGGCTGCTCACTTGTGCATTTATTTATTTTTAAAATTGATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTAACACTTGATCTAGTACTGGCTATGGAGTCCAGGCTGGCCTTGAACTCCCCACCCTTTCCTGTGTGTATTTACTATGTGTCTGTTCTGCCCCCTTGAGCTTTCCTGAGTATGAGAACTGGGTTAGGTTCATTCAATGCCACATGGCAGCCACGTAAGTTCTCAGTACCCAAGGCTGTGCCACCTCTGACCGGTTTTGTCACCCTCCCCCTGGGGACCAAGTGCCATGGACATCAATAGGTTCACAGAAACATTAACTAGTCCACGACTTCTGCCTGACCCGAACATATTCTGCTAAGAACGTACCCCAAGTCTGCCTGGGGCCAACATGCTCACTCAGCATGAGCTAGCTTGTGGACACTCATGTAGGCTCCCCACCCTTCTCCCACACAGTGCCACCGTGCCACCAGTAGGTCCCTCTGCAGTCTTAGCTGGAAGCACCAGGCCGGGTGCCCTCTCAGGCTCTGCCATGTCCCTTCCTGCTGCAG
Seq C2 exon
CTCAGAGAGCCGATGTGGGTGGGGAGGCAGCAGGCACCGCCATCAACCACTCCCACATGCTGCTCCAGCGACTGCAGGACCTGCTGCGCCAGGGCAATGCCAGTGATGTCATCCTGCGGGTCCAGGCTGTGGGCACCGACGAGGTCCGAGCCTTCCACACCCATCGCCTGTTGCTGGGGCTGCACAGTGAGCTGTTCCGGGAGCTGCTGAGCAACCAGAGTGAGGTTATGCTGCGGGAGTCCCGGGACTGTGCTGCTGTCTTTGACAAGTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000202-Btbd17:NM_028055:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0065126=BTB=PU(61.8=73.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTCCCTCCAGTGGACTT
R:
CGCAGCATAACCTCACTCTGG
Band lengths:
358-1995
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: