GgaINT0128452 @ galGal3
Intron Retention
Gene
ENSGALG00000023359 | BTBD17
Description
NA
Coordinates
chr18:9152754-9154151:-
Coord C1 exon
chr18:9154015-9154151
Coord A exon
chr18:9153031-9154014
Coord C2 exon
chr18:9152754-9153030
Length
984 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
ACAGTCCCACCTCCCTACAGCCC
3' ss Score
8.76
Exon sequences
Seq C1 exon
CGCGCGCCCCGTGCCGCGCCGCGCTGCCGGCAGATGCGAAACGATGGCGAGGCTGACGGGCACCCGGCCCACAGCTGCCCGCCGCTGGGGCTGCGCAGCCACCGCTTTCCTCCTCCTCCTCCTCACCGTGCAAGCTG
Seq A exon
GTAAGGGCGGCGGTGGTGGGGGGGAGGCGTGGAGGGGTCCCTGGGTCCCCCGACCCTCTGTGCCCTGGCGGTGATTTGGGGCTGAGCGCGGCACTCCAGCAGCCGTTGTGCCGTGGGGTGGGATGGATATGGTGGCTCCTGGATGTGCTGTGCCCCACAGGGAGGTCCGGCTGCCCAGCGCAGGGCTCAGCGCTGCGGGCATTGCGGGGCGAGGGACTGCAATCGCCTCCTGATCCCCGCTCAGTGGGGTTTAAGCCGGCACTGGGATGGGTAATCTGCGGGATTGCCAGCCGGCCAGAAGCAGATTGGAGAGATGGAGCCAAATTCATCAAGATGAGCCGGGGAGGCAGCGGGGGGTGTGCCAAGCATGTGGGAGGGCGAGGAGCAGGAGGAAGGCTCCCCGTACCCACAGGAACAGAGCTCCCTGCAACACTCTCCCTGTGCACGGGAGGTGTGGGTTCGTGGCACCAGGAGGAGGCAGGGATCACGCTGGGAGCAGGCACGGTGTGGTGCCATCCCAGCAGCTGCAGTGCTGCGGCCACTGGTACCTCAGCCTGCAGGGAGTCCCAAAACCTACCTCGTGTGCCCTCCCACCTGGTTGGCATATCTGGATACATAAGTTTTTGGGGCAGAAGTCAACAATCATCTAAAAAGAAATCGTTGAGAAAACTTACACGCTTTCCCCGGGCTCTGTGGAGCGTGCCCGGCGCAGGGCCATTTCCCAGCACGTCCTAGCTTGGTACATGGTGGTCTCAGCCCTTCTGCTGCAGAAAGGCAGCTTGTTGGCTCCCAGAGACACAGCTGTCCCCATGTCCCCTTGTCTTCCCCACATACCCTTGGCAGCAGCCAACCCTTTGGCACTGTGAGGAGCACAGGGAAGATGCGCACGAAGCAAAGCTTCCCCAGTGCCCTATTAGCCACACATCCCGCCTTGTTGTGCCTGGTGCTGGGGCACAGCAGTGGGACAGTCCCACCTCCCTACAG
Seq C2 exon
CCCAGAAAGCTGACCTGGGCGGCGATGCCACTGCGGCCACCATCAACCACTCACTGACGCTGCTGCAGAGGCTGCAGGAGCTGCTGCAGAACGGCAACAGCAGCGACTCGGTGCTGCGGGTGCGCACGGCTGCCTCCGATGAGGCCAAGGTCTTCCACACCCATCAGCTGCTGCTCAGCCTCCAGAGTGAGGTCTTCGAGGGGCTCCTGCGCAACCAGAGTGTTGTCACCCTGCATGAGCCGCCCGAAACTGCCGCGCTCTTTGAGAAGTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023359:ENSGALT00000038481:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0065126=BTB=PU(61.8=73.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGCGAAACGATGGCGAG
R:
CTCATGCAGGGTGACAACACT
Band lengths:
345-1329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]