BtaINT0027257 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030166 | BTBD17
Description
Bos taurus BTB (POZ) domain containing 17 (BTBD17), mRNA. [Source:RefSeq mRNA;Acc:NM_001205464]
Coordinates
chr19:57719488-57722442:+
Coord C1 exon
chr19:57719488-57719764
Coord A exon
chr19:57719765-57721367
Coord C2 exon
chr19:57721368-57722442
Length
1603 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TCTCTGTACCTCTCTGGCAGGTA
3' ss Score
10.2
Exon sequences
Seq C1 exon
CCCAGAAAGCTGATGTTGGCGGGGAGTCAGCAGGCACCTCCATCAACCACTCCCAGATGCTGCTCCAGCGCCTGCAGGAACTGCTGCGGCAGGGCAATGCCAGTGATGTGGTGTTGCGGGTGCAGGCCATGGGCACCGACGAGGTCCGAGTCTTCCATGCCCACCGCCTGCTGCTGGGACTGCAGAGTGAGCAGTTCCGGGAGCTGCTGAGTAACCAGAGCGAGGTGGTCTTGCAGGAGTCCCGGGACTGTGCTGCCGTCTTCGACAAGTTCATCAG
Seq A exon
GTGGGGAAGGATCGGGGGAAGACATCCCTTTCCACGTCCCTGGCTTCTCTACTCAAAGGGTGATGGAAGCCCTGGCTCTTAGCCCTGCCCCTTCCCTGGATGGCATTAGGATGACCATGCAACTACCTCCCTCTTCCCTCTTTGCACCAGCTTCTTGCAAAATGCAGCATGACTCCCCTGACTGAAAGCTCTGAATGGTTTGAAGTTAGTTACCAAATACTTTCAAAGCTGTTTCCAAACCTGGCCTTGAGAGCTTTTAAGGACTATAGACTTCTAGGCCCCACCCTGAATCCCGAGCTTCACATTTAGGGCTGGGCCACTGTTTCTTATTTTAATGTTTCTGTGTGGTTTTGCTGTCTGGCCAGGTTTTGAACCACAGGGCTAGGGGGCTGCTTCGTGCTAGCGTTCTGCACAGGGACACTGCCCACACTCTAGTCTGAGAAAATGACCCTGCTTTAATAGTTTAGACAAGATGGCTGCGGAATATTGGTCATTTCTTCAAACTTCCAGGCAACAGAAAGAGAGATAGCACAGAAGGACAAAAGCATCTTTCCTCTACCCCCTAACTGGGAAAGATTGAAGGAAGGAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTCCGGGCCTCCCTGTCCATCACCAACTCCCAGAGTTCACTCAGACTCAGGTCCATTGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCAGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATGAGGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCAATCTCTACCCTAGTCAGTTCTATTTAACCAGCCTTTCCCCCAATCCCAGTCTGTGCCTTTGTGGACATCTCATTAGCTAGAATTTAGTCATGTGATCTAAGGGATCCTGGGAAACATCTTTTGTTCCCAGAGGCAAACAGCGAAGTTAAATGGCTTGCCCACTCTTATAGCAAGTAACTGGCGGAATATGAATCCGAACCCACACTGTACACGTGGTGAGGGTAGGAGCTACATCTTTCTTGTCCTAGCACAGAGCTCAACCACTCAGTGGGCGCTCAATATAGGAATCATCGACGTGCTCAGTCAGCTAAGTCCTGTCTGATTCTTTGGGACCCCAAGGGCTGTAGCCCACGAGGCTTATGTGTCCATGGTATTTTCCAGGCAAGAATACTGGAGGGGGTAGCCATTTCCTACTCCAGGGGATCTTCCTGACCCAGGGACAGAACCTGCGTCTCCTGTATTGGCAGGCGGATGCTTCACCACTGAGCCACCTGTGCTCAATAAATGCTTGCTTATTTCCACGTCCCACGAGAAATCGGAAAGAAGAGGCGGTGAAGTAGGATGCGCGCGGGAAGGTCCTTCTGTTGGCTCCCTTAATGACGATACTGTCTGCCCAAGGCCGGGTATCCTCGGGACTCAGGAGGCAGCGCTGGATAGGGTAACCGCAGGCCGCCCTGACCGTGCTCCATCTCTGTACCTCTCTGGCAG
Seq C2 exon
GTACCTCTACTGCGGAGAGCTGACCGTGCTGCTGGCACAGGCCATCCCCCTGCACCAGCTGGCCACCAAGTACCGCGTGGCCTCCTTGCAGCGGGGCGTGGCCGACTATATGCGCGCGCACCTGGCGGGCGGCGCGGGCCCGGCGGTGGGCTGGTACCACTACGCGGTGAGCACCGGGGACGAGGCCCTGCGCCAGAGCTGCCTGCAGTTCCTGGCCTGGAACCTGTCGGCCGTGGCGGGGAGCGCCGAGTGGGGCGCCGTGAGCCCTGAGCTGCTGGCGCAGCTGCTTCCGCGCTCGGACCTCGTGCTGCAGGACGAGCTGGAGCTCTTCCAGGCGCTGGAGGCGTGGCTGGGCCGCGCGCGGCCGCCGCCGGCTGTGGCCGAGCGCGCGCTGCGCGCCATCCGTTACCCCATGATCCCTCCGGCTCAACTGTTCCAGCTTCAGGCGCGCTCGGCCGCCCTGGCGCGCCACGGCCCGGCGGTGGCCGACCTGCTCCTTCAGGCCTACCAGTTCCACGCCGCCTCGCCGCTGCACTACGCCAAGTTTTTCGACGTCAATGGCAGCGCCTTCCTGCCCCGCAACTACCTTGCGCCCGCCTGGGGCGCCCCGTGGGTCATCAACAACCCAGCACGCGACGATCGCAGCACCAGCTTCCAGACGCAGCTGGGCCCAAGCGGCCACGACTCGGGCCGCCGGGTCACCTGGAACGTGCTCTTCTCGCCACGCTGGCTGCCGGTAAGCCTGCGGCCTGTCTACGCGGACGCCACGGGCACAGCGCTGCCCCTCGCACGCCCCGAGGACGGCCGGCCCCGGCTGGTGGTCACGCCGGCCAGCAGCGGCGGCGACGCGGCGGGCGTGAGCTTCCAGAAGACCGTGCTGGTGGGGGCGCGCCACCACGGCCGCCTGCTGGTCCGCCACGCCTACAGCTTCCACCAGAGCAGCGAGGAGGCCGGTGACTTCCTGGCGCACGCCGACCTGCAGCGGCGCAACTCCGAGTACCTGGTGGAGAATGCCCTGCATCTCCACCTCATTGTCAAGCCCGTCTATCACACCCTCATCCGGACCCCCAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030166:ENSBTAT00000042549:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0065126=BTB=PU(61.8=73.1)
A:
NA
C2:
PF0065126=BTB=PD(37.3=11.4),PF0770710=BACK=WD(100=28.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCAACCACTCCCAGATGC
R:
GCATATAGTCGGCCACGCC
Band lengths:
351-1954
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development