RnoINT0026888 @ rn6
Intron Retention
Gene
ENSRNOG00000003109 | Btbd17
Description
BTB domain containing 17 [Source:RGD Symbol;Acc:1563331]
Coordinates
chr10:103334052-103337859:-
Coord C1 exon
chr10:103337496-103337859
Coord A exon
chr10:103336255-103337495
Coord C2 exon
chr10:103334052-103336254
Length
1241 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CCTCTCCAACTCTCTTGCAGGTA
3' ss Score
11.54
Exon sequences
Seq C1 exon
AGCCACCAGTTCGTCCCTTTGTATCCTTAGTTGGAAGCACCAGGCTGGGTGCCTTCTCAGGCTCTGCCATGTCCCTTCCTGCTGCAGCTCAGAGAGCCGATGTGGTTGGGGAGGCAGCAGGCATCTCCATCAACCACTCCCACATGCTGCTCCAGCGACTGCAGGACCTGCTGCGCCACGGCAACGCCAGTGATGTCGTCCTCCGAGTACAAGCTGTGGGCACGGACGAGGTCCGAGCCTTCCACACCCATCGCTTGTTGCTGGGGCTACACAGTGAGCTGTTCCGGGAGCTGCTGAGCAACCAGAGTGAGGTGGTGCTGCAGGAACCGGGGGACTGTGCTGCCGTCTTTGACAAGTTCATCAG
Seq A exon
GTATGGCAGGGAAAGGGCACCGTGCTGTATCCTGACCGCAGCCCCCCAGCCTCTCCGCCTTCAGGGTCACAGAAGTCTGGCCTCCCTGCTATGTCCCGTGTCCCTTCTGTACTTTGGGGGTCCCTTCTGAACTACTTCAAACCTGGCTAAGAACACTTACAGAAGCAACAGACTCTTGGTCAGTTTCAAGTATCTTAAATGGCCACGGGCCTTTGAAAGCTTAAGGAGTGGAAAGGTCAACGGCCTCTGCCTCTCCTTCTTGCACAGGGAAAGCCTTGCAAAATTGTAAAACGGTCTGAGGAGGTAGCCCTGTTCTAACCGCTCAGACAAGCTGCACCTCCGAGTTCCAGGCAACAGGAATAGGGATAAAACGGAAGGTTTTCCCACAGAGCCAAGCGGGGTGCTGTGTGCCACTGAGACTGCCAGGAAGAATGAGGCGGGGGCTGGGCGGGGGCGGCGCTGTAAGGGGGGGCAGCGCTGTAAGAGAACCAAAGACAGTAACATAACTAAGAGGGGAAGGGGATCAGAGGAAAAGCCAGAGCTGGAACAGGAAGTAGCACGGGTCGGCCGTGTACTGTGTAGCCAGATTTTTCACTGCCTCTCCACATTCTGGACTTGCCTTGTCTAACGGCAAGGAGGAAGTCAGATGGGCATCTAAATCCAGACTATGGACACCACGGTTACTGGCAGCCCCTTCTCGTTTGCGCTTATCGTTAGACGTGTACATGCTCAATAAATCCATATGATTTCCACAGTACCAGAAGCTAAAGATGACTGAACAGGTCAGGAGGGAAACACGGGAAGCCTCAAGGCCCATTCATCCCGTTTATCCCTTACATAAACCTGTGTCCCCTCTAGGTTCTGGGGTGGTGTGGTTGGCCTTGACAAGACTCAGCCCCACCGATCTTCCGATCTCTACTTTTTTTTTTTCTTTTTTCTTTTTTCCGGAGCTGGGAACCGAACCCAGGGCCTTGAGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTACTTTTATTTTTTTTAAATCATATTACTAACTTGTGTGTCTGTATGAGTGTATGCCGCATGTAAATGGGTGCCCTGCTCCGGGCAGAAGAGGGCTGGAGTTACAGATGGTTTTCCAGGCACCCAGTGCGGATGGATACTGGAGACCGAACTCCGGTGCTCCGGGAAAGTGTTCTTAACTGCTGTGCCATCTCAACGGGTCCCTCTCCAACTCTCTTGCAG
Seq C2 exon
GTATTTGTACTGTGGTGAGCTGACGGTACTACTGGCCCAGGCTATCCCACTGCATAGGCTGGCCACCAAATACCGAGTAGCATCCTTGCAGCGAGGCGTGGCCGACTACATGCGCGCGCACCTGGCGGGAGGCGCGGGCCCCGCTGTGGGCTGGTACCACTATGCAGTGAGCACCGGGGATGAGGCTCTGCGCGAGAGCTGCCTGCAGTTCCTGGCTTGGAACCTTTCTGCCGTGGCGGGGAGCGCGGAGTGGGGCGCCGTGAGCCCCGAGTTGCTGGCACAGCTCTTGCAGCGCTCGGACCTGGTGCTGCAGGATGAGCTGGAGCTGTTCCACGCGCTGGAGGCGTGGCTGGGCCGAACGCGGCCGCCCCCCACCGTGGCCGAGCGAGCGCTGCGCGCCATCCGCTACCCCATGATCCCGCCGGCACAGCTGTTCCAGCTGCAGGCGCGCTCGGCCGCGCTGGCGCGCCACGGCCCGGCGGTGGCAGATCTCTTGCTGCAGGCTTATCAGTTCCACGCCGCCTCGCCGTTGCACTACGCCAAGTTCTTCCACGTGAACAGCAGTGCTTTCCTGCCGCGCAACTACCTCGCCCCGGCCTGGGGCGCCCCATGGGTCATCAACAACCCGGCTCGCGACGATCGCAGCACCAGCTTCCAGACGCAGCTGGGGCCAAGCGGCCACGACGCGGGTCGTCGGATTACCTGGAACGTGCTCTTCTCCCCGCGCTGGCTACCCGTCAGCCTGCGGCCCGTCTACGCGGACGCCGCGGGTACCGCGCTGCCCGCCGCGCGCCCGGAAGATGGGAGGCCGCGACTGGTGGTCACGCCGGCTAGCAGCGGTGGGGACGCGGCGGGCGTGAGTTTCCAGAAGACCGTGCTGGTGGGTGCGCGCCATCAGGGCCGCCTCTTGGTCCGCCACGCCTACAGCTTCCATCAGAGCAGCGAGGAGGCTGGCGACTTCCTGGCCCACGCAGATCTGCAGAGGCGCAACTCCGAATACCTGGTGGAGAATGCACTGCATCTCCATCTCATTGTCAAGCCGGTGTACCACACCCTCATCCGGACTCCCAGTTAGTCTCTGGATTAAGAGATAAGGCTTGACCTGGGTGGCGCTCCACGTTGTTAAAGTGACTTTGGCCTGGGCCTTGGGTGACCAAGTGCAGCTGGTTGGGACTAGGGTGGAGGCAGGTGAATGTGGTAGACAAGATGGCTCTGGTTTCAGGAGTGCCTTTCCCAGATAACTTGAAGGCAGCATTTTTGGTCAAGAATAAACCGATGCCCAGAGAGGCCAGGTACTGAAGCCATTCCGGCTCTCAAAAGTCTGGGGTTCACATGCCCTTCACTGAGCTCCTCCCTGCCAGAGACCCCACCTGTGCATGAATTAGGGCGGGGAGGACTGATTGACTTAGGGGTTGTTGGTTCTGAGCGATCTCCCTTTCAGATAGGAATTTCCGCATAGGAGGCTGGTAACTTTCTGTGCTGCAATCTCCAGGGGACAGCCGCCGCTGTGGCTTGTGGGGGGGTCTTTCTGTCACTGTCACCAAATCCCTGGCCTCTTAACGAATGGTCCAGGCTAGTGGAATGGCCCTTGAGAGACGGCTGAAAACCAGACCTAGCTTTAGCCCCATCCTTCTGGCGAGGGAGAGTCTTGGCATCCTGAGGAAAAAACCCATTCCCCTGTTGTGTGTAGGTGTGCGTCGAGGGAGGTGGGGTGCTGGGAGAGAAAGGGTTAGGATCTAAACGAGTCTTAGTCCCAACACTGCACATTCACCGCTCCCAACACAGCCATCAAAACCCCAGTAGGACTTTATTTAAAAGAAAGGCAAAAAGAAAGAAAGAAAAAAAAAGAGCAACAAAGAAGTTACAAAACCAGACTCCCTCCCCATCCCCTCCCCTCCTTATGTGAAGTCCTGTGGGCTCCTTCCCATCCCCCATCTTCAGCCAAGCCCAGGGGTGGGCCAAGTCCTGTCTTACTAACAGCTCCTCTCCCCCATTGCCGAAGCCGAAGCCGAGACTGGCCTCAGGTCTGTATAAGTTTTTGGCAACAATGTTCTGTCCCGGGCTGGGAAGCCGGGTCTCTGGGACTCATCTCCCATTCTAGTGGCAGAGTGAACATGGAAGAGCTGTGCAGGCAGCCCAACCGTTTCTGGGTCATGGGAGCCCAGCCCTCCAAGCTCTTGCTCCACGGGATCCCCAACTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003109:ENSRNOT00000004191:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.078
Domain overlap (PFAM):
C1:
PF0065126=BTB=PU(61.8=55.7)
A:
NA
C2:
PF0065126=BTB=PD(37.3=11.4),PF0770710=BACK=WD(100=28.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAGAGCCGATGTGGTTG
R:
GCTACTCGGTATTTGGTGGCC
Band lengths:
358-1599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]