MmuINT0026166 @ mm10
Intron Retention
Gene
ENSMUSG00000000202 | Btbd17
Description
BTB (POZ) domain containing 17 [Source:MGI Symbol;Acc:MGI:1919264]
Coordinates
chr11:114791217-114794126:-
Coord C1 exon
chr11:114793850-114794126
Coord A exon
chr11:114792523-114793849
Coord C2 exon
chr11:114791217-114792522
Length
1327 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
CCTCTCCAATTCCCTTCCAGGTA
3' ss Score
11.47
Exon sequences
Seq C1 exon
CTCAGAGAGCCGATGTGGGTGGGGAGGCAGCAGGCACCGCCATCAACCACTCCCACATGCTGCTCCAGCGACTGCAGGACCTGCTGCGCCAGGGCAATGCCAGTGATGTCATCCTGCGGGTCCAGGCTGTGGGCACCGACGAGGTCCGAGCCTTCCACACCCATCGCCTGTTGCTGGGGCTGCACAGTGAGCTGTTCCGGGAGCTGCTGAGCAACCAGAGTGAGGTTATGCTGCGGGAGTCCCGGGACTGTGCTGCTGTCTTTGACAAGTTCATCAG
Seq A exon
GTACATAGGGGAAGGGCACCGTCCTGCATCCTGTCCTGCATCCTGTCCGTGGCTCCCTGTCTCTCCACCTTCAGGGGCGCAGAAGTCTGGCCTTACTGGTTATTATATCGACTTTCAAAAGTCCTAGCATGACATACAACACAGGCTTCCTTTATCCCTCCTTCCGATGCCCTCCCTGTTGTGGCCTGTGTCCCTTTCTGGCCTTTGGGAGTCCCTTCTGAGCTACTTCCAAACCCAGCCAAGAGCACTGATAGAATCAACAGATTCTTAGTTGGTCCCAAGTGTCTTCAATGGCCACAAGACTTTGAAACCACAGGGCTAAGGAGCAGAAAGGTCAACAGGCTCGGTCACCTCTCTCCTTCTTGCATAGGGAAAGACTGTAAAATGCTCTAAGGAGGTAACCCCGCTCTAAGGGCTCAGACAAGGTGGCTGCAGGATTCCAGACAACACCCCCAAGTTCCAGGCAACAGGAAGAGGGATAAAACAGAAGGGTTTCACATAGAGCCAAGCGGGGTGCTGTGTGCCAGTGGGACTGTCAGGAAGAATGAGGCAAGGGGGTGGGCAGCACTGTAAGAGAGCCAGGGACAGTAAAATGGCTGAGAGGGAGAGGGAATCCAGACAGCTGAAAAGCCTAAGCAAAGAGAAGCCGACAGGGAACAGGAAGTAGCCTGGGTTGCCTGTGTGCTGTGTAACGAGATTTTTTCTGAGCCTCTCACAGTGACAACATTCTGGAGGTGGGCTCTTCCCCTTTCTTAGGCATCTTGGGATTCCTAAATTAAAGGACTTGCCTTCTCTAGCAGCAAGGAGGAAGTCAGATAGGCATCTAAATCCAGACTGTGTGGATACCAAGGTTACTGGCGGCCTCTTATGGTTTGAGCTTAGAGTTAGCTATGAAGTAGATGCTTAGTAAATACATGTGATTTTCACAGCACCAGAAGCTAAAGATGTCTGAACAGGCCAGGAGGGAACTTAAGAAGAAAACATAGGAAGCCTCAAGGTCCATTCATCCTGTTTGTTTCTTACAAAAATGGCTGTGTCCCCTTTGGGTTCTGGGGAAACTTGCAAGGGTAGTGTGGGTGGCCTTGACAATACTCAGTCCCGCCGATCTTCCTATCTCTAATTTTTTAAATCATATTATTAGCATGTGTGTCTGTATGAGTGTATGCCACATGTAAATGGGTACCCTGCTCCAGCCAGAAGAAGGCTGGAGTTACAGATGGTTTCCAAGGCACCCAATGTGGACTCTGGAGCCCGAACTCTGGTGCTCTGGACAAGTGCTCTTAACTGCTGTGCCCTCTCAGCGGGCCCCTCTCCAATTCCCTTCCAG
Seq C2 exon
GTATTTGTACTGTGGTGAGCTGACTGTACTGCTGGCCCAGGCTATCCCGCTGCACAGGCTGGCCACCAAGTACCGAGTAGCATCCTTGCAGCGAGGCGTGGCCGACTACATGCGCGCACACCTGGCGGGAGGCGTGGGCCCCGCTGTGGGCTGGTACCACTACGCTGTTAGCACCGGGGATGAGGCTCTGCGCGAGAGCTGCCTGCAGTTCCTGGCTTGGAACCTTTCTGCCGTGGCGGGGAGCGCGGAGTGGGGAGCCGTGAGCCCCGAGTTGCTGGCGCAGCTCCTGCAGCGCTCGGACCTGGTGCTGCAGGATGAGCTGGAGCTGTTCCACGCGCTGGAGGCGTGGCTGGGCCGCGCGCGGCCGCCCCCCACCGTGGCCGAGCGAGCGCTGCGCGCCATCCGCTACCCGATGATTCCGCCTGCACAGCTTTTCCAGCTGCAGGCGCGCTCGGCCGCGCTGGCGCGCCACGGCCCGGCGGTGGCAGATCTCTTGCTGCAGGCTTACCAGTTCCACGCCGCCTCGCCGTTGCATTACGCCAAGTTTTTTCACGTGAACGGCAGCGCCTTTCTGCCGCGCAACTACCTCGCCCCAGCCTGGGGCGCCCCGTGGGTCATCAACAACCCGGCTCGCGACGATCGCAGCACCAGTTTCCAGACGCAGTTGGGACCCAGTGGTCATGACGCGGGTCGCCGGATTACCTGGAACGTGCTCTTCTCCCCGCGCTGGCTGCCCGTCAGCTTGCGGCCGGTCTACGCGGACGCCGCGGGCACCGCGCTGCCTGCCGCGCGCCCCGAGGACGGGAGGCCGCGACTAGTGGTCACGCCAGCTAGCAGCGGTGGCGATGCGGCGGGCGTGAGCTTCCAGAAGACAGTGCTGGTGGGTGCGCGCCATCAGGGCCGCCTCCTGGTGCGCCACGCCTACAGCTTCCATCAAAGCAGCGAAGAAGCTGGCGACTTCCTGGCCCACGCAGATCTGCAGAGGCGCAACTCGGAATACCTGGTGGAGAATGCGCTGCATCTCCATCTCATTGTCAAGCCGGTGTACCACACCCTCATCCGGACTCCCAGTTAACCTCTGGATTGAGAAATAAGGCTAGGCCTGGATGGCGCACCAGGGTGTCAAAGTGACTGTTGGCCCGGGCCTTGGGTGATCAGGTGCAGCCGGTTGGGACTAGGGTGGAAGGCAGGTGAATGTGGTAGACAAAATGGCTGTGGTTTCAGGAGTGCCTTCTCCAGCTAATTTGAAGGCAGCATTCTTGGTACAGAATAAACCGATGCTCAGAGGGGCCAGGTACTGAAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000202:ENSMUST00000000206:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.078
Domain overlap (PFAM):
C1:
PF0065126=BTB=PU(61.8=73.1)
A:
NA
C2:
PF0065126=BTB=PD(37.3=11.4),PF0770710=BACK=WD(100=28.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCAGTGATGTCATCCTGC
R:
TAACAGCGTAGTGGTACCAGC
Band lengths:
351-1678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types