GgaINT0128453 @ galGal3
Intron Retention
Gene
ENSGALG00000023359 | BTBD17
Description
NA
Coordinates
chr18:9151359-9153030:-
Coord C1 exon
chr18:9152754-9153030
Coord A exon
chr18:9152440-9152753
Coord C2 exon
chr18:9151359-9152439
Length
314 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
CACCCCACCCTCCACCCCAGGTA
3' ss Score
7.12
Exon sequences
Seq C1 exon
CCCAGAAAGCTGACCTGGGCGGCGATGCCACTGCGGCCACCATCAACCACTCACTGACGCTGCTGCAGAGGCTGCAGGAGCTGCTGCAGAACGGCAACAGCAGCGACTCGGTGCTGCGGGTGCGCACGGCTGCCTCCGATGAGGCCAAGGTCTTCCACACCCATCAGCTGCTGCTCAGCCTCCAGAGTGAGGTCTTCGAGGGGCTCCTGCGCAACCAGAGTGTTGTCACCCTGCATGAGCCGCCCGAAACTGCCGCGCTCTTTGAGAAGTTCATCAG
Seq A exon
GTGCGTGGGGAGCCCGTGGGATGGGGACGCCCACGGGAGGGATGCAGACGTGGAGGGAGGTGTTCCCATGGGGACAGTGGGAGCTCCATGGGAAAGGGATGCCTGGAGGGATGCTACCTTCGGTTCTACAAGGACCTGGTGGGATGGGGACAGCAGAAGGGATGGAGCCAACTGGGTAAGATGTTCCCACGTGGATCCTGCGGGATGGGGGTGCTGGGAGGGATTGCAGCCAAGGAAGGAGGATGCTCTCTCAAGGACCAGTGGGTTGGGAATGGGGTCAGAGGACAGCGGTGTCACCCCACCCTCCACCCCAG
Seq C2 exon
GTACCTGTACTGTGGGGGGGTGTCTCTCCTGCTGCACCAAGCCATCCCCCTGCACCAGCTGGCCAGCAAGTACCGGGTGTGGGGACTGCAGCGTGGCGTGGCCGACTACATGAGGAGCCACCTGGCCAGCGAGTCGAGCCAGGGCCACGTGGTGGGCTGGTACCACTATGCTGCACGCATCGGGGATGCAGCGCTGCAGGAGAGCTGCCTGCAGTTCCTGGCCTGGAACCTGTCGTCCGTGCTCGGCAGTGCCGAGTGGGCTTCGGTCAGCGTGGAGCTGCTGCTGCTGCTGCTGGAGCGCTCCGACCTGGTGCTGCACAGCGAGCTGGAGCTCTACACCGCCGTGGAGGCCTGGCTGGCCCGGCGGCAGCCCGAGGATGCTGTGGCTGAGCGGGTGCTGCGTGCCATCCGTTACCCCATGATCGCTCCCAGCCAGCTGTTCCGGCTGCAGACGCAGTCGGCGGTGTTGGTGCGGCACTACGGCGCGGTGCAGGACCTGCTCTTCCAGGCCTTCCAGTTCCACTCTGCATCCCCTCTGCACTTCGCCAAGTACTTTGACGTCAACTGCAGCATGTTCCTGCCCCGCAACTACCTCGCGCCCAGCTGGGGCTCCCAGTGGGTCATCAACAACCCGGCACGGGATGACCGCAGCACCAGCTTCCAGACCCAGCTTGGGCCCAGCAGCCACGACTCCGGCAAGCGGGTGACCTGGAACGTGCTCTTCTCGCCGCGCTGGCTGCCCGTCAGTCTGCGCCCCGTCTACTCGGACTCGGTGTCCAGCGCCATCCAACCGGTGCGCATCGAGGACGGCCGCCCGCGCCTCGTCGTCACGCCAGCCACCAGCAGCCCCGACTTCGCCGGTGTCAGCTTCCAGAAGACGGTGCTGGTGGGCGTGCGGCAGCAGGGCCGCATCTTTGTCAAGCACGCCTACAGCTTCCACCAGAGCTCGGACGAGACGGCTGACTTCCTTGCCCACGCCGACCTGCAGAAGCGCACCTCCGAGTACCTCATCGACAACGCCCTGCACCTGCACATCATCATCAAGCCCGTCTACCACTCCCTCATCAAGGTGAAGAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023359:ENSGALT00000038481:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0065126=BTB=PU(61.8=73.1)
A:
NA
C2:
PF0065126=BTB=PD(37.3=11.4),PF0770710=BACK=WD(100=28.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAACCACTCACTGACGCTG
R:
GGTGGCTCCTCATGTAGTCGG
Band lengths:
358-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]