BtaINT0029116 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:18994039-18994315:+
Coord C1 exon
chr7:18994039-18994121
Coord A exon
chr7:18994122-18994224
Coord C2 exon
chr7:18994225-18994315
Length
103 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ACATGATCTGTCCCCCCCAGTGC
3' ss Score
8.13
Exon sequences
Seq C1 exon
CATGGGGGTGTGGAAGATCAAAGCCTACTATGAAGATTCTCCGCAGCAGGTCTTCTCCGCTGAGTTTGAGGTGAAGGAATATG
Seq A exon
GTAAGAGGGTCCAGGGAACTGGGGTTAGGGGGTAGGGGGATGGGGGAGTGCATCAGGCTGGGCCCAATGCTGGTCCCCCACCAACATGATCTGTCCCCCCCAG
Seq C2 exon
TGCTTCCCAGTTTTGAGGTCCAACTAGAGCCTGAAGAGAAATTCTACTACATTGATGACCCAGATGGCCTGAAGGTCAACATCATTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280:ENSBTAT00000022979:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(25.0=82.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGGGTGTGGAAGATCAA
R:
GCAATGATGTTGACCTTCAGGC
Band lengths:
171-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]