HsaINT0023691 @ hg38
Intron Retention
Gene
ENSG00000125730 | C3
Description
complement C3 [Source:HGNC Symbol;Acc:HGNC:1318]
Coordinates
chr19:6713992-6714248:-
Coord C1 exon
chr19:6714166-6714248
Coord A exon
chr19:6714083-6714165
Coord C2 exon
chr19:6713992-6714082
Length
83 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
CAACGCCATCTCTCCCCCAGTGC
3' ss Score
8.11
Exon sequences
Seq C1 exon
CATGGGCCAGTGGAAGATCCGAGCCTACTATGAAAACTCACCACAGCAGGTCTTCTCCACTGAGTTTGAGGTGAAGGAGTACG
Seq A exon
GTAAGAGGAGGAGGGGCTGGGGGGAGTCAGTGCCCAGAACGCCTGGCCCAGCGCCGGCCCCACCAACGCCATCTCTCCCCCAG
Seq C2 exon
TGCTGCCCAGTTTCGAGGTCATAGTGGAGCCTACAGAGAAATTCTACTACATCTATAACGAGAAGGGCCTGGAGGTCACCATCACCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125730:ENST00000245907:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(25.0=82.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGGAAGATCCGAGCCTA
R:
CTGGCGGTGATGGTGACCTC
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development