MmuINT0026825 @ mm9
Intron Retention
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57364276-57364540:-
Coord C1 exon
chr17:57364458-57364540
Coord A exon
chr17:57364367-57364457
Coord C2 exon
chr17:57364276-57364366
Length
91 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
GTCTTCATACCCCATCCTAGTGC
3' ss Score
5.29
Exon sequences
Seq C1 exon
CATGGGGCAGTGGAAGATCCGAGCCTTTTACGAACATGCGCCGAAGCAGATCTTCTCCGCAGAGTTTGAGGTGAAGGAATACG
Seq A exon
GTAAGTCTTGGGGCATCCAGCAGGTGAGGCCCTTGTGCTTATGCTGCCCTGGCAGCCATGCCAACACCATCGTCTTCATACCCCATCCTAG
Seq C2 exon
TGCTGCCCAGTTTTGAGGTCCGGGTGGAGCCCACAGAGACATTTTATTACATCGATGACCCAAATGGCCTGGAAGTTTCCATCATAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-C3:NM_009778:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(25.0=82.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGGCAGTGGAAGATCC
R:
AACTTCCAGGCCATTTGGGTC
Band lengths:
160-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: