DreINT0003598 @ danRer10
Intron Retention
Gene
ENSDARG00000093198 | C3 (8 of 8)
Description
complement component 3 [Source:HGNC Symbol;Acc:HGNC:1318]
Coordinates
chr1:55352390-55352663:-
Coord C1 exon
chr1:55352581-55352663
Coord A exon
chr1:55352478-55352580
Coord C2 exon
chr1:55352390-55352477
Length
103 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
AACAGCTCTTCTTCTTTCAGTCC
3' ss Score
8.27
Exon sequences
Seq C1 exon
CCCAGGGCTCTGGAAACTTGTGGCCTGGCACAAAAACAGCCCTCAGAAAAACTTCACCAGCGAGTTTGAAGTCAAGGAATACG
Seq A exon
GTAAGAGCGTCTAAACGAGTCTCTGAGCTCTTGCGAAACAACATCACACACAGAATCACTCTGGACATCCGCAGCCCACTGATAACAGCTCTTCTTCTTTCAG
Seq C2 exon
TCCTGCCCAGCTTCGAGGTGTCTTTAAGTCCACACAAAGCCTTCTTCTACGTGAACGATGACAGTCTCTTAGTCGACATCCACGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093198:ENSDART00000143793:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(25.3=82.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGAAACTTGTGGCCTGG
R:
TGGCGTGGATGTCGACTAAGA
Band lengths:
163-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]