RnoINT0027369 @ rn6
Intron Retention
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9724058-9724329:+
Coord C1 exon
chr9:9724058-9724140
Coord A exon
chr9:9724141-9724238
Coord C2 exon
chr9:9724239-9724329
Length
98 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
ATCTTCATACCCCATCCCAGTGC
3' ss Score
4.62
Exon sequences
Seq C1 exon
CATGGGGCAGTGGAAGATCCGAGCCTTCTATGAACATGCACCAAAGCAGACCTTCTCTGCAGAGTTTGAGGTGAAGGAATACG
Seq A exon
GTAAGTCTTGGGGCACCAACAGGTTGAGGGTGAGGCCGTTGCTCTTATGCTGTCCTGGCAGCCATACCAGGCACCATCATCTTCATACCCCATCCCAG
Seq C2 exon
TGCTGCCCAGTTTCGAAGTCCTGGTGGAGCCTACAGAGAAATTTTATTACATCGATGACCCAAAGGGCCTGGAAGTTTCCATCACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834:ENSRNOT00000073042:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PD(25.0=82.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGGGCAGTGGAAGATCC
R:
AAACTTCCAGGCCCTTTGGGT
Band lengths:
161-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]