BtaINT0030549 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021808 | CACNB3
Description
Bos taurus calcium channel, voltage-dependent, beta 3 subunit (CACNB3), mRNA. [Source:RefSeq mRNA;Acc:NM_174509]
Coordinates
chr5:31122049-31126056:-
Coord C1 exon
chr5:31125792-31126056
Coord A exon
chr5:31122172-31125791
Coord C2 exon
chr5:31122049-31122171
Length
3620 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
ACCGCGTCTCCCCACACCAGGGT
3' ss Score
7.58
Exon sequences
Seq C1 exon
GGGACCGGCAGGGTTTTGGGGGGTGGGGGGAGCGGTGATTTGAGCTCGGAGCAGCTGGTCTTCGCGGCTCGCTCCCTCCTTCGCTCTCTCGCTCTCCGCCGCCGCCCGCAGGGCTGCGGGGCTCGGTGGCATCTCCCGGGCGCGGCCCGCTGTCATCGCCCCTGCCTCCGGGCCGCTCCCGCCCCCGGCGCCGCTCGCTTCCCCCCACCCGGACTCCCCCATGTATGACGACTCCTACGTGCCCGGGTTTGAGGACTCGGAGGCG
Seq A exon
GTGAGTGCCCACGGGGAGGGTGGGGGTGGGGACGTTGGGGTGACACCTCCTGTCCCTCGGACCCTTCCCCCAGTTCAGGACTTTGAGGAACGCCTCTGTGGCGGGGCAGGGCATGTCGTGGGGGGGGGGGGGTGGCGCTCCAGCAAAGTGGAGCGATGGATGTTCACGCCAGAGGCTTCCCGGTGCCCCCGTCCTAGAGCAGGACGCATCCGGTGTGTGCCGAGAGGGGCTCGGGTGGAGGGAGGCTCAGAGCAGGTGGCTCCACAGCCCAGGACAGAAGGGTAGAGGGAGGCGGGGCTGGAGACTGAGGGCACGGAGGCATTAGAGAGGCCTCGGGCAACGTCTGGAGTTCCCCGAGGGAGGGTTTCTGGGGTCTGAACTCAGCAGACACAGGAGATGCGGGGGTTCTTACAGAGGGGGACAATCCAGCCCTCCTGTGCCTTAGTAAAGAACAGATTAGGGAACCTGGAGAAGAGCAGAGGATCCCATACCAGCCCCTTCAGACAGAAGGATCATAAAACTTGAGGACCTCCATTATCGCCTTCAGCTGGCTATCCCCGGGCACTGCCTTACCTCCTCTCCCCCCTCAGCCCAGCTTCTCTCCCAGGCTGGAAACTGGGTGCCCAGCACATGGGTGGGCCGGCTGACTGTGCCCCAGCCATCCCATTCCTCCTGCTGAGGCATCCCCAAGCAGGGGGGCATCCTGAGCACCTGCTCAGCAGGGAGGCCGGGAGATGAAGCCAGAGAAGCCCAGGGCCTGGGGATGGAGAGAAAGCTCTTTGCTCAGAGAACCAGGCAACTGATAAATATTTAATTCTCCTCTTTGCTTTTATCTCCTGACCCACTGAGACAAATCAGCTCATTAGGCAGTGATTCCCGGAGCTCAAGAGGGCAGGGAGAGTGCCTGGAAAGATGGGGCAAGGATGGGCAGCACTGTCTCAGTCCCTTCTCTCCAGCATCCTACAAGAAGGCCTCCTTATGAAAGCAGCTGGATGGCTTGAGAGGGGTCTCTGATCTGATATGAAGGGTAGGGTGCTCCAGGGTCAAAGGGGGAGTGTTGGCGTCTTCTCCCGTCTCCTGCTGCCATGCCCAGGATAGATGAGTTCTGGGGCTCAGGAAAGACACCTATCTATCAGTCCTTTTCGGGGACTGGGCCCCTGCTGGGCCCAATTCCCCACTGGGCCTCTGGGGCTAATTACATTGCAGCTAGAGCAGATGATTTTCAAGGCTCTGGTGAACACCTCTTCCTGACAGTTGAAGGGACAGCTGGCCACGGCCCAGGGTGCCAAGGTGAGCTGGAGAATGAACCTCCCTCTGTGGGGCTGGAGGGCCCTAGAAGGTTCTTCCCATCTCTAGTTGAGAAGGCTTGGACTGTTTCAAGGTAAAGCCTGACATAGGGATGGTGTTTGGGGCAGCCTGCTAACCCATTGCTGGTTCCCCACCCCTCTCTGGTTCCTGGATTACCCTCCCCCACTTTCCTTTCTCTTGCCTGGCTCCTTGCTCTCCCTGAGGCCCCCTCTGAAGCAGTAGGAGGGAAATCAGGCTCTAAATAAATCCAACGGCTCATCTCCCTCCTCTCCTTCCCCCGTGCCAGGCAAGAGTAGAGCTGCAGCCTGCCCACACACTCACCAGGCGAGGGGGGCACCACCAGGGCACAGTGCCAACTCCTGGCAGCTCCAAAGCACTGAGCCTCTGGCTGTTTTGGCATAACAGGGGGTGGGGGAGGCAAGACCCCAGGGTCTGCTTGGTGGGGCAGCCCTGGCTTCCCTGAGTCATGGGTGAGCTCTGAGGACCTGGGAAAGATGGAGAGGGGATTGCATTCTGAGCATGACTCACGGAACATTAGGGAGAGACCCTGTCATCCCGTCTTAGTCCAAGAGGTCAGGTAACCCAGGTGCCCCAGGCAGGAGCACAATGACTCAGGCGAGAGCCTGGAGAACAGAGAGGAAGGGTCAGGCTCCTCTCCCATCTAGGAAGCATCTGGCGTGTACTTACCAATGCATGTGGTCATCCTGCCTCACCTGCCCCCTTGCCTGCTGGCCCCTGTTCACTTCACACAGCTGTTTCCCACAGAGGCATCTCCTGTGCCCCGGGCCCCTGGGACGAGGTCCCCTCCTCAGCTGATAGAGCTAAGGTTCTTCCTGGGGCTCAGCTGCTCTTTATCCTGCTCCCAGGCCGGGCTTATTTAGTTCTCAAGGGAGATGGGGAACGTGCTCTGTGAAATGGAGGCCCGTCCCTCCTCATGCTGTCTTCATGCCTTGGGTCTAGCACGGACGTTGTCGTGAGCTTCCACACTAGGACCTGGGCTGCCCACAGGCTGACCAGCCCTCTTGCCCACGGTGGGCTAGTGTGTGAGTTTGTCTTCCCCACCCAGAATCAGGCCTCCGCTGCCTTCTGTGGTGGTCATGCACAGTGGGTCTGAAGGAATGTTCCTCAGCCTGAGAACATTCTACTACACACGCACACATGTGTACATTCCCACATGGTCCCTTTATCTAGGCTCCTGCCTGATCTCTGCCCCCTGGACCTCAGAACTGATGCAAGTATCCCTTCAGGCTTCTGCTCATAAAGAGGGGAAACTGAAGCAGGAAACAAAAGACTCCCTTTTCCCTAGACTGAGGGGGAAACCCAGACATTCTGACTTCTTCCCTCCTGCCCTGAGGTCCAGCTTCCCTTGTTCATCACCCTCATGGCCTTGAAGGTGAGCTCTGCCACCCTCCTAAGGCCCCTCATTGCTCAGAGGCCCTTCCTCTGAGCAGGAGTCAGACACCCTCCTTCCTCAGGTTACCAGAGACCCCTCCCTCCATCCCCAGGGTTGCTCCTGGCTGGGTTGCTGGGCACCAGCACTGCCTTCCTCCAGGGCTGATATCCCCCCCTGGCAAGGGGTGGAGAGATATAGGCCAGGTGGTAGGCATGGCCAGGCTTCATCTGGGCTCAAGGAGGTAGCTTTATGTTGCCTCCTCAGTCTGTGCTGCCCACACCTGGCCAGTTGTCCCAGCAGGTGTGAGAGGAAAGAAAGTAGGGGTAGGGAGAGCAGGAAGGGAGTAACTGCCAGAAGTTGGGAGCCCCATGTCCTCTCCTTCACCAAGGATAAGAGAGGGGATCTAAGGGGGTAGGCAGCTATATCCTGACACTCAGGACCAGCGCCATGCCAACCAGTGTCTCTTGACTGCTCCTGGCTGGCTATACTCCTGCCAGGCATTTTAAGGAAATAGTTTCCAGGCTGCTTTGCATGCTGATGTGAACAAGAGGGTTGGGTCTTCTGGATTCCAAAGATTCCGAATCATCCCTAGTATGTCATCTTCAGTACATCTCACCTCCCTCTGCCTCACAGGACATGGTCAAGGGGAGAAAAGGGAGGAAGGAGGGAAATGAAGGCTCTATTCACGGCTGCAGTATTAATAGGTTTGGGAGGAAGAGCCCAGATCTCAGCACATATGGGTTGGACTGGCTTTCCCGCAGCCCCAGAAGCACTGGTGCCTTTCCTGGGGAAACAGGAGGGACTGACAGGGCCAGCCACCCCCATGGAGCTGGAGAGGCTGAGGTTCATGGGGTTTGGAGGTGCCTTTCTAGTGCCCAGCACTCCTGAGCCCACAGGTCACCGCGTCTCCCCACACCAG
Seq C2 exon
GGTTCAGCCGACTCCTATACCAGCCGCCCATCTCTGGACTCAGACGTCTCCCTGGAGGAGGACCGGGAGAGTGCCCGGCGTGAAGTGGAGAGCCAGGCTCAGCAGCAGCTGGAAAGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021808:ENSBTAT00000029069:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.976
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120523=VGCC_beta4Aa_N=PU(93.0=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]