RnoINT0028242 @ rn6
Intron Retention
Gene
ENSRNOG00000054274 | Cacnb3
Description
calcium voltage-gated channel auxiliary subunit beta 3 [Source:RGD Symbol;Acc:2248]
Coordinates
chr7:140315368-140319867:+
Coord C1 exon
chr7:140315368-140315502
Coord A exon
chr7:140315503-140319744
Coord C2 exon
chr7:140319745-140319867
Length
4242 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
ACACAGATTCTCCCGTCCAGGGT
3' ss Score
4.97
Exon sequences
Seq C1 exon
GGGCTGCGCGGCTCGGTGGCATCTCGGGCGCGGCCCGCCGTCCTCGCCCCCGGCGCCGCTCGCTCCCCCCACCCCACCCCGGACTCCCCCATGTATGACGACTCCTACGTGCCCGGGTTTGAGGACTCGGAGGCG
Seq A exon
GTAAGTGCCCACGGGGGAGGGTGGGGGTGGGGGAGTCGGGATGACACCTCTCTCTTCAACCCTTCCCCCAGTTCTGGACTTTGAAAAATGGCTTGGCAGCGGGCAGCGCGCGTAAGATGGGGGGCGGGGGGCTCTCTAGGAAAGTGGGGAGATGGCCCCTCATAGCCAGGTATCCCAGATACTTCGGTGTGTGCAAGAGGGACTCTATAGGGGGACGGCTCGAGCAGGTGGCCCCAGAGCTCAGGGCATAGGAGGTTGAGGAGAAGACAGACAGAAGGCCCTGACACCAAGGTTTTAGAGGGAACATGGAACGTTTGGAGTTCCAAATCCTAGGTACATAGGGGTCTGAACACAACAAGGAAAGCTGAGCTTCAGGGGAGACACTCCGGACCTGTGCCTCAAGTAAATGACAAATTGGGGAGCTGGAAGAACATTAGAGAGTGGGGTGCCAGCCTCTGAGGACAGGAATTCTAGAACTTGAGGTCTGTTATTCCCTTCTGCCCACCATCCCTGCGCATGGCCTTGACTCTTCACCATTGCCTATAACCCTGCTTCTTGGAAAGGCCACCAACCACGGGGATGGGCCGTCAGACTGAGTTCAGTCTAGCCCCCTGCCGAGGTTTCCTCTGAGCCCCTGCTCTCCGTGGAGGGTCCGGAGGTGAGGCCAGGGGAGCTCAGGGTATGGGGATGGAAAGGAAGCTCTTCGCTCAGAGAACCAGGCAGCCAATAAATATTTAATTCTCCTCTTTGCTTTTATCTCCTGACCCACTGAGACAAATCGGCTCATTAGGCAGTGATTCCCGGAGCTCAGAGAGCAGGGAGAATGCCTGGAAAGGTGGGACAGGAGTGGGGAGCCGCTTCAGAGCCCCTCGGAGTTGCGGGTCTTCCCTCAGACATCCCACACGAAGGCTTTCTTGGGAAAGGACCGCTAACGCGGCTTGAAAGGGTCCCCTGACAGGATTAGGTTGAGCCTTCCGTCTCAGGCCCAGGAAAGATGAGGAGTGAGCCTCAGAGCGGGCATGTGTCAGTCGATTCTGGGACCAGGCTCCTTCTGGGCCCAATTTTCCATGGGGCTCTGGGGCTAATTACGTTGCAGCGAGAGCAGAGAGATGATTCCGAAGGCTCTGGTGGGCACCTCTTTCTGACAGTTGAAGGGACAGCTGGTGTAGCCCAGGGAGTCAGGATGAGCTTGTGGAGAGATCTCTGTGGGGCTGCCCGGCCTGAGGAGCTTCCTTCTCATCCCTGGTGAGAAGTCAGGGCTGTTGCAAGAGACTGACACGTGGATGTTGTTTGAGGGCAGCCTGCTGACCCTCCCTGGTTCTTGGATCTCCAAACCACCCCCCAACTTCCCTTCCTCCAGCTAGCTCCTTGCTCTCCCTGAGGCCCCCTCTGAAGCAGTAGGAGGGAGATCAGGCTCTAAATAAATCCACTGGGCTCATCCCCCTCCTCTTCTTCCCCCGTGCCAGGCAAGAGAGGAGCTGCAGCCTGCCCACACACTCACCAGGCAAGGGGGGCACCACCAGGGCACTGTGCCAACTCCAGCAGCTCCAGAGTACTGAGAGGTTTTTGGGGCGTAATGGATTGGGAAATAAGACCTCACCATTCTACAGGGTAGAATGTTACCTACTTCCTAATCGATAACCAGACCAGCATAGTCAAACCCCCCAAGACATGAGAATTATGGAAAGTGGCTTCCATTCTGATCACAACTCATTAAAGAATTTAGGGAGAGACTCCCGTCACTTTCTAGGGTTAAGAGGTTACCTAGTCTAGATACCCCAAAGGCATTAAGGACTAAATTAGGCTGACTGCTTGGATCAGATGAGGTCAAAGTTACACTTCCCCCCACCGCCAATAACCTGCTGGGTACACAGAGGAAGTATGGGGGTACTTGCACAGTGGGTGGTCATCCGGCCTCCCTCTGGCCCTTTTCACCTGCTGGTCTCTTAGTCCTTCAGCCAGCCACACCCCACATTTAGCACTTACGTCCTGGGTGTGAGGTCCCTCACCCCTTGTCCAGGTTTTTTCTGGGCCTTAGCCTTGTTTTCCTGTGGCTGGAGAGATGGGGGGCGGGCAGCAGATAGCCTCTACTTCTGCAAAACAAAAGACTCCCCCTCCCTCCCCAGTTCTGGGGCTGCCTCAAGCCATTTGGTTTACAATAGACACAGTCTTTAGAACAGATTCCAGGGCTGCCTGAGCCAACCTGGCCTGCCTTCGCCCTGCACACGCAGCGCTGGGCCCCAGGCCTGGTTGACAGCGGGGTGTGAGTTTGCCTTTTCCAAAGAGGAGTCTGGCTTCTGCTGCTTGTGGGTAGGTAGTCATAGCCTGTGGCTTTAAGAGACTGTTTCTTCAGCCTCAACATCCTGAAACCTCTTTCCTTACGCACATCCTTTTACCTAGCCTGTAAGCTTTTTTTCTGTGGTGCTGACATCTTGGAATACTGGGAAGAATTCCTCCAGGCTCCTGCACATAGGAGACACGGAGTCGGAAAAGGTTTCATTTCTTAACTTTCAGCCGCTTGTCTCAAAAGTTGAGCTTCCCCTATTCATCTGGCCCGTCCTCCTTTCGGAGAAGGTGAACTCTGTAACTCTCCAAATGTAGGCTTCTTGCCCCAGGACCCTACTAAGGGCAGGACTCAATGTCTATCCCTTCCCCGAGGTCCTGTATGTCATCTGGGTTGCCTGGTACAGTCTCCCTCCAGGCCCTGCTGTCCCTTGGGCCCAGGATAGAGAGATACAGGCCAGGTGTACCTGTCTGTATTACTCACACCTGTCCAGTCCCCACAGGACTGAGAAGGAAAGAAAGTGGGGGGAGCCAAGGAGTCTGTAGCTTTGGTCCTGTCTTCAGCCTTCACACACAAGGCAAGGCAAAGCACTCATATCTGTTTGACAGCTTTCAGAAACCTTGTTGGAAGCCAGCTGTCGGGGTACACAAGCACCTGGGAGACAGACAGGTGTCTCTCTCTCTCTCTCCCCCTCTCTCCCTCCTTCCCCTCCCTCTGTCTCTCTCTGTCTCTCTGTCCCCCCACCCCCCTCTCTCGTGTGTATTGGTTTGGTTTTTTTTTTTTTTTTTTTTTTCTCGGAGCTGGGGACCGAACCCAGGTCCTTGCGCTTGCTAGGCAAGTGCTGTACCACTGAGCCAAATCCCCAACCCCTGGTTTGGTTTTTAAGACAGAGTTTCTCTGTGTTGCCTTGGAAATCACTCTGTAGGCCAGGTGCCACCACCACAGGATTCATGTGTGTGTGTGTAAGGTCAGACATATGCATGCCACTGTATGTTTTCATTTACTGTGCATAGAGTCTGTGTAAGTGTGTTAAGCTCAGACACACACACACACACACACACACACACACACATGCTGCTCTGTGTGTATGTTTTAGCTTACTGTGTATTTTCAGAGATGGCTTCTCTACTTCTGTTGGTCCCCTGGATTTACCTCAGGTCATGTTTGAACAGCAAATGCCTTCATACCATCCTGGTCTTGAGGGTGAGGGGGTTGGTCTCATGCAGCCCAGAAGGTGTAAGTCTCTTAGCTACTAAATTGACCCCCCCAAGCGCTGGTGTGCAGCTGGCATCTCCCCCCCCCCCCGCCCCAGGGCTGGGGATCGAACCCAGGACCTTGCGCTTCCTAGGCAAGTGCTCTACCGCTGAGCCAAATCCCCAACCCCAGGCATCTCTTAGCTAGGTGTACTCTAGTCATCTTTTTTTTTTAATTTAAAGCTGTTTGTTTCTAAAGATTTGTTTATTGTAATATTTATTGTACACTCTAGCTGTCTTCAGATCTCATTCCAGATGGTCGTGAGCCACCGTGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTCAACCACTGAGTCATCTCTCCAGCCCCTTTCCAGTCATCTTAAAGGGATAATGTCCCGGCTACTTCAGGCTAACATGGAGATAAGAGACGGTCCCCTGGATTTAACACCATCTCGAATACATTGTCTTTAGTATTTTGATATTTAGTACAGGGGAGAAGGGAGAGAAAAAGGTAAAGATTTCATTCAGAAATCCAGGTGCGGGGTAGAAGGCCCTGAACTTTGCACATACAGATTGGGCGGCTTCCCTGTAGCCTTAGAGACACCAGGAGACACACAGGAAGCAGCTTAGGGGGTCAAATCATCCCCTAGAAGATGGAGAAGCTGCATCAGGGCTAGGAGGAGGCCCGTATGGTCCCTTTTACACAGATTCTCCCGTCCAG
Seq C2 exon
GGTTCAGCCGACTCCTACACCAGCCGCCCCTCTCTGGACTCAGACGTTTCCCTGGAGGAGGACCGGGAGAGTGCCCGGCGAGAAGTGGAGAGTCAGGCTCAGCAGCAGCTGGAAAGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054274:ENSRNOT00000081206:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.976
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120523=VGCC_beta4Aa_N=PU(93.0=97.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]