BtaINT0031097 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008153 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr16:81322636-81323639:+
Coord C1 exon
chr16:81322636-81322772
Coord A exon
chr16:81322773-81323418
Coord C2 exon
chr16:81323419-81323639
Length
646 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
GCCCGCCCGCTCCTCTCCAGGCG
3' ss Score
8.31
Exon sequences
Seq C1 exon
GATGATCAAAAGGCAGAAAATGATATGGCCATGAAACGAGCAGCTTTGTTGGAGAAACGATTAAGAAGGGAGAAGGAGACACAGCTTCGGAAGCAGCAGCTGGAAGCCGAGATGGAGCACAGGAAAGAGGAGACCAG
Seq A exon
GTGCGGCCGCCGAGCGGGAGGGGCCTGCTGGCTCCTTAGCGGGCATCGGGAGGCCTTCGCGGAGTCAGTGCTGATTTGGGGCCTGCTGGCTCCTTAGCGGGCATCGGGAGGCCTTCGCGGAGTCAGTGCTGATTTGGGTGCTTCTTAGGAGTTTATTTATTTAAGTGTTGGTTGCATGTTTTTATCCCAAGCTTGAAACATTGATTTAAAATAATTTTCCTGGGTTTTTCTCACACACACACATTTTTTAAAGTAGTTATTTATTAATGATATAGTTAATGACCGCGGTTGTCCCAGGTACACTTTAAATGGAGCGTTTTCCAGGTGTTGACTCGCTCGCGCCCCCCACCAACCACGCTCACTGCCCCTCACCACCTGTCACGCATGCTCAGCCCCCCCATGCACGCTTACCGCCCCTCACCTCTCCTCACGCACACTCCCCACTCCTCACGCACGCTCACTGCCCCCCCCCGCCGCGCACGCTCACTGCCCCCACCACCTGTCACGCATTCTCACCCCCCCCCCCCCCATGCACGCTCACTGCCCCTCACCTCTCTTCACGCATGCTCACCCCACCTCACACGCACTCGCCGCCCCTGGCCGCCCCCGTACGTGCACAGTAAGCGGCCCGCCCGCTCCTCTCCAG
Seq C2 exon
GCGCAGGACGGAGGAGGAGCGGCAGAAGAAGGAGGACGAGCGGGCGCGCCGTGAGTTCATCCGGCAGGAGTACCTGCGGCGCAAGCAGCTGAAGCTCATGGAAGACATGGACAGCGTCCTCAAGCCCCGGCCTCAGGTGGCCCGGCAGAAGAAGCAGCGGCCCAAGTCCATCCACAGGGACCACCTCGAGTCCCCCAAGACGCCCGTGAAAGGTCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008153:ENSBTAT00000010723:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.894 A=NA C2=0.853
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGAAAATGATATGGCCATGA
R:
GACCTTTCACGGGCGTCTTG
Band lengths:
342-988
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development