MmuINT0028494 @ mm10
Intron Retention
Gene
ENSMUSG00000041570 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:136276538-136277330:-
Coord C1 exon
chr1:136277194-136277330
Coord A exon
chr1:136276759-136277193
Coord C2 exon
chr1:136276538-136276758
Length
435 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTGGCCATTTGGTTTCTTAGACG
3' ss Score
4.94
Exon sequences
Seq C1 exon
GATGATCAAAAGGCAGAGAATGATATGGCAATGAAGCGAGCAGCTTTGCTGGAGAAACGGCTAAGAAGAGAGAAAGAGACTCAGCTTCGGAAGCAGCAACTGGAAGCGGAGATGGAGCATAAGAAAGAGGAGACGAG
Seq A exon
GTGAGGAGGATGCTGCGATGATCTGCAGTGAGACTCAGGCTCTTTAGAGAGAACTGCAAGTGTGCCTTCAGGGCAGGCAGTGTTCTGTCAGCTCTGGAGCGACAGGGTTCTTCAGGAACATTGTGGGGGACAAAAAGGAGCGAGACCATTGTTGACTAGGGGCAGTTTTAGAAGATCAAACTATTCTTTTTGCTTGTCAGGGTGTTAACTTTAAAAGTTAATACTATGTTTAAATACTATTAATTTAAATAACTGAGAAACACATACAGAGAGAGGAAAATGACCAAAATTTTAAATTTTCTCAAGGACATTTTAAGCCAACTATGTTTTTCCCCAAGATTCTGAAATATTTTCCTCCCTTCAAACATGTAACTCTTTCCAGTGTCATTTGTATTTGATATACAAAATAACCAATTTGGCCATTTGGTTTCTTAG
Seq C2 exon
ACGAAAAACTGAAGAAGAACGTCAGAAGAAGGAAGACGAGCGAGCACGGAGAGAGTTTATCAGGCAGGAATACATGAGGAGGAAACAGCTGAAACTGATGGAAGACATGGATACAGTAATCAAGCCTCGACCTCAGGCGGCTAAACAGAAAAAACAGCGGCCAAAATCCATTCACAGAGATCATATTGAATCTCCCAAAACACCGATCAAAGGCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570:ENSMUST00000192001:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.886 A=NA C2=0.983
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGAGAATGATATGGCAATGA
R:
GAGGGCCTTTGATCGGTGTTT
Band lengths:
345-780
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types