DreINT0040933 @ danRer10
Intron Retention
Gene
ENSDARG00000062173 | camsap2a
Description
calmodulin regulated spectrin-associated protein family, member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-3016]
Coordinates
chr22:22325792-22326232:-
Coord C1 exon
chr22:22326096-22326232
Coord A exon
chr22:22326013-22326095
Coord C2 exon
chr22:22325792-22326012
Length
83 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
ATATATGTTTTTCTCCACAGGTT
3' ss Score
12.4
Exon sequences
Seq C1 exon
GATGATATGAAGGAAGAGGACAGCATGGCCTTGAAGCGAGCAGCACTTCTGGAGAAAAGGCTGAGAAGAGAACGGGAAAGCCAGCAGAGAAAACAGCAGCTGGAGGCTGAGCATGAGCAGAAGAAAGAGGAGGCTAG
Seq A exon
GTAAGAGCCAGCTCAGCTGTCAATCAAAGAGTCTAAACTCTTGCCCCCTAATTCTGAACTCTAATATATGTTTTTCTCCACAG
Seq C2 exon
GTTAAAAGCAGAGGAAGAACGCCTGAAGAAAGAAGAAGAAAAGGCTCGGCGAGAATTTATAAAGCAGGAATACTTGAGGAGGAAACAACTGAAACTGATGGAGGACATGGACACGCTTGTCAAACCGCGGCCTACAGGAGCAAAGCAAAGAAAACCACGGCCTAAGTCCATCCATAGAGATGTGATGGAGTCCCCTAGGACTCCTGTCAGGGCCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062173:ENSDART00000142947:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.826 A=NA C2=0.807
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAAGAGGACAGCATGGC
R:
CGCCGAGCCTTTTCTTCTTCT
Band lengths:
180-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]