GgaINT0036853 @ galGal3
Intron Retention
Gene
ENSGALG00000002145 | CAMSAP2
Description
NA
Coordinates
chr8:1381610-1382439:-
Coord C1 exon
chr8:1382303-1382439
Coord A exon
chr8:1381831-1382302
Coord C2 exon
chr8:1381610-1381830
Length
472 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTATCTGATGATTTCTTTAGACG
3' ss Score
5.19
Exon sequences
Seq C1 exon
GATGATCAAAAGGCAGAAAATGACATGGCAATGAAACGAGCAGCATTATTGGAGAAGCGTTTGAGAAGGGAAAGAGAGACTCAGCTTCGAAAGCAGCAGCTGGAAGCAGAGCTAGAACATAAGAAAGAAGAGACAAG
Seq A exon
GTAAAACCAACTACATATCCTGGTCCAAATGACTGGTAACCATGAACATAGAAATGTCATAGTTAATAGCTTTACTTCCACGTCAAATAATTCATCTTAATATATCCAAGGTTATTTAATCCTCCAGTCAAATGTGCTTAGGAGCCTAGCTGAAGATGTGCCAGCTGGTTGTGTGAAATCAGCAGGTGGCCTCAGTCCATAGCTTACATAGAACATGAGCCCTGCTGACATGAGTGATGCTCCTCAGATCGTTACCCTGCTCTACATTTGACGTTCTGAGAGAGAGCTTAGCAATTTGGGCTTCAATCTGCACAGGTGTACAATGGCAAGTTCCTCTGTTCCTCTTATTGATGTCTGAGAACTCTGAAGTACTAAAAATCTAATGCTTGTGTTTTCCTCACTGGCAATGTGCTAACTGTAACTGTTATCTTGGAAAGTTGCTACTGTTGAATTTATCTGATGATTTCTTTAG
Seq C2 exon
ACGCAAAACAGAAGAAGAACGTCAGAAGAAGGAGGATGAACGAGCACGGCGAGAATTCATTAAGCAGGAATACATGAGAAGGAAACAACTAAAGCTTATGGAAGAAATGGATACTGTTATAAAACCACGTTCCCTGTCAATCAAACAAAAAAAGCCACGTCCAAAATCTATTCATAGGGATCACATTGAGTCACCTAAGACACCGGTCAAAGGTCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145:ENSGALT00000003364:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.761 A=NA C2=0.920
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGAAAATGACATGGCAA
R:
TGGACCTTTGACCGGTGTCTT
Band lengths:
344-816
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]