MmuINT0028494 @ mm9
Intron Retention
Gene
ENSMUSG00000041570 | Camsap1l1
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:138173115-138173907:-
Coord C1 exon
chr1:138173771-138173907
Coord A exon
chr1:138173336-138173770
Coord C2 exon
chr1:138173115-138173335
Length
435 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTGGCCATTTGGTTTCTTAGACG
3' ss Score
4.94
Exon sequences
Seq C1 exon
GATGATCAAAAGGCAGAGAATGATATGGCAATGAAGCGAGCAGCTTTGCTGGAGAAACGGCTAAGAAGAGAGAAAGAGACTCAGCTTCGGAAGCAGCAACTGGAAGCGGAGATGGAGCATAAGAAAGAGGAGACGAG
Seq A exon
GTGAGGAGGATGCTGCGATGATCTGCAGTGAGACTCAGGCTCTTTAGAGAGAACTGCAAGTGTGCCTTCAGGGCAGGCAGTGTTCTGTCAGCTCTGGAGCGACAGGGTTCTTCAGGAACATTGTGGGGGACAAAAAGGAGCGAGACCATTGTTGACTAGGGGCAGTTTTAGAAGATCAAACTATTCTTTTTGCTTGTCAGGGTGTTAACTTTAAAAGTTAATACTATGTTTAAATACTATTAATTTAAATAACTGAGAAACACATACAGAGAGAGGAAAATGACCAAAATTTTAAATTTTCTCAAGGACATTTTAAGCCAACTATGTTTTTCCCCAAGATTCTGAAATATTTTCCTCCCTTCAAACATGTAACTCTTTCCAGTGTCATTTGTATTTGATATACAAAATAACCAATTTGGCCATTTGGTTTCTTAG
Seq C2 exon
ACGAAAAACTGAAGAAGAACGTCAGAAGAAGGAAGACGAGCGAGCACGGAGAGAGTTTATCAGGCAGGAATACATGAGGAGGAAACAGCTGAAACTGATGGAAGACATGGATACAGTAATCAAGCCTCGACCTCAGGCGGCTAAACAGAAAAAACAGCGGCCAAAATCCATTCACAGAGATCATATTGAATCTCCCAAAACACCGATCAAAGGCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-Camsap1l1:NM_001081360:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.891 A=NA C2=0.977
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGAGAATGATATGGCAATGA
R:
GAGGGCCTTTGATCGGTGTTT
Band lengths:
345-780
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: