BtaINT0031101 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008153 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr16:81326798-81328212:+
Coord C1 exon
chr16:81326798-81326913
Coord A exon
chr16:81326914-81328093
Coord C2 exon
chr16:81328094-81328212
Length
1180 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTATTAAATTCTTATCATAGGAC
3' ss Score
7.4
Exon sequences
Seq C1 exon
GTCAGAGTCTGTAGAAGGCTTCTTATCTCCAAGCCGGTGTGGCAGCCGGAACGGTGAGAAGGACTGGGAGAACGCATCCACCACGTCGTCCGTGGCCTCAGGGACGGAGTACACAG
Seq A exon
GTGAGTGCCCGCCCATCCTTGGGAAGCATTTGGCCAGGGGCTGAGACGCGATGCAGGGTGCGCTGCATGCAGAAGACAGATTGGAAACAGTGGCTGAGGCGGCGGTCACTTTCAGGTAAGTCAGTGTCTGTGATTTGGTTCCAGTCAGAGTGGTGGCAGCTTGTCCCAGATGAATTCAGCTTCAGAAAAATAGCAATATCCCTCAGCCCTCGGCCCCCGGCTTCTCCCTTAAAAACCCTGCTTGTCTCTGTGTTGTAGTCTGGGTCTGAGGCTGTCTCAGTTTGGTCTCCAGAGGTCCCTCTGCCCCACATCAGTCATGAGTGAGGGGAACAGCTCGGCTCCACCAAGTCCTTCCTCTCATGCTGGGCCTTCAAGGTCTGGACCTGCGCGTCTAGAGCAAGTGTTGAGAGGCTCTGAAAGATAAAGGAAGGCCTTAGGTCCAGGAGGGCACCTGGTCTGGCTCTGTTGGGGGAGACGTTGTTGAAGGAGAAGCACGCAGAATAACATGTGGGTGAGAACTAAAGCAATGAAGCAGGAGAGAAAGTGGGAGCAGCCGTGGAGAGTAGGTGGGAGAGTGACGGGGACCACCCGTGTCCCGCTGGCATCCGGCTGACCCCCAAGTGGTCCCCGAAGACCCAGGGGGCAGAGCTTGCTGACTCCCCCAGAGTTGTTTCCTCCCTACCCTGTGGCTCCAGCTGGCCCAGCAGCCTGTAAGGTCAGTGCAGCAGCCGTGTCTGCCGGCCCCGGGGGAGCCCAGACCTGCAGGGCTGTCAGACACACAGTGAACCTTCCAGGAATTACATGGCTGCAGAACCACTGGTAACTCTGAGTCAGCCATGCTGGGAGTAATTTATTCCAGATATAGATAAACATGACAAATCAGGGCTAATTTTTTTCTCTTCCAAAGAACTGGTTTCTCTGCATACTTAACTGAAGGCCTCCTGGAGGAGTTCCAGGAAAGTGGCAGAAAGTACTGCCCTCCAGGCCACCTCGGGAGGCCAAAGGGGACCCGCGAGTGTAGCCCTGTGGATAAAACTGGGTCCTGACTGGAACAGGACAGTCAGGGGCCTTCATGTTAGAGTTTAATCAGTGTAGGAACAGTTGTATCATTTAAACATAAGTAGTATTTCTGACTTAGGAAAGTTATTTTACTGTTATTGTTATTAAATTCTTATCATAG
Seq C2 exon
GACCAAAGCTCTTCAAAGAACCCAGTGCAAAATCCAATAAGCACATAATACAAAATGCTTTAGCTCATTGCTGTTTGGCTGGAAAAGTAAATGAAGGTCAGAAGAAAAAAATACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008153:ENSBTAT00000010723:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.925 A=NA C2=0.350
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
A:
NA
C2:
PF086836=CAMSAP_CKK=FE(30.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGAGTCTGTAGAAGGCTTCT
R:
TTCTTCTGACCTTCATTTACTTTTCC
Band lengths:
222-1402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development