RnoINT0028782 @ rn6
Intron Retention
Gene
ENSRNOG00000008741 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:RGD Symbol;Acc:1310950]
Coordinates
chr13:53149055-53151570:-
Coord C1 exon
chr13:53151455-53151570
Coord A exon
chr13:53149174-53151454
Coord C2 exon
chr13:53149055-53149173
Length
2281 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
GTTGTTAACATTTCCTACAGGAC
3' ss Score
7.98
Exon sequences
Seq C1 exon
GTCAGAGTCTGTAGAAGGCTTCTTATCTCCAAGTCGCTGTGGCAGTCGGAATGGCGAGAAAGACTGGGAAAACGCATCCACGACCTCTTCAGTGGCTTCTGGAACAGAATACACAG
Seq A exon
GTTTGCGTGAACATTTCAGGGGAGCATTCTAATTTAACACACTAACAAGAACAGGCGGAGAGGGGCACGGCTGTTACAGGTTCCCCTTGCATCACAAACACCAGCGTATGGTACAGGAAGAAAGGTCACTCACTCTGAGGCATGAGCCTTTCCCATTGCAGCCCCACTGAAGGGGCAGTGACTCCTGAGTACAGTAGGCTCTAAACAGAGCTAAAGATGTAACTTAGATGCCATCTGCCCATATTACTGGCCACTTCTGTGTGGTAATGTGGGCTCAAAGAAATGTTAGAGAAGTTTCATCAACAAAATATTGTTCCTCATAACTACGTGAAGGAGCTTCTGTTCTTCATAACTCTCCCTAAAAAAAATAAAAGTAAAACTTACTGGTGAAGCCTTTGCCTAATTTGCATGAGGGCCTGAGCTTAATTCCTAGCCCCACCAAAATAATAATGCTAGTAATACTATCAAGGGAACCTACAGGTAAGGGCATTAGATCTAGGAGGTGCCATCCTCACTGTCCCTGTTCCCTCCAGCTCCTCTTTCAGCCTCTGTGGGTGGGCAGCACTGACTAAAGCCAGAGCAGAGATTAGAAAGTCAGAGTACAGTTAAAGACACGGAGCAGAGGCAGGAGTGAGGAGACGGGGCACCTGTGTGAGGTGAAGGACAAGGGAGGAAAAGGATGGGGTCCCATGTACCTGCGGTTTTGCAGAGTTGGAAGCCTTACCACACCCTCAGTAGCCAAGAAGCAGTTAGAAACTGTTTGTGTATTTACTTTCTGGCTTCCCCTCCCCCTCTTTATTCTTTAGCTGTTTGGTACAACTTCCTATGGTCTATCTGACAGCATCTATCTCTTTGTTAAATTTATCCCGTGTGCATGAGTGTTTGCCCATGTGCATGTCTGCTCCCCACGTGCATACCTGGTGTCTGTATCAGGAAGACATCAGATCCTCTGGGACTAGAGGTAGAGATGGTGATGCGCCACGGCGTGGGTGCTGGGAAGCTGGGGATCAAACCCCCCCCCGGGTACTGTGGAAGAGCAAGCAGCTGGTGCCACCTCTCCAACCCCAGTCTGGCAGCCTGCAGTGTGAGACTGGACAGTATTTCCATGTTGCTCTCTCTGCCTCTGTAAAGTTGAGCAATCTTAACAGCCTGGAAAAAAGCTGTTTTCGTCATTTTGCGTGTGCACGCAGAGCCAGAAGACAGCCTGTTCGTATGGCAGCGTGCGGCAGCGCTCCTTTCGGATTTGGAGGCAGGGTTTCCCCGCGCCCCTCTCTGGCCTGCCTGCTTTCTGAATACTGGTGTCACAGGCACATGCTGCAACCTCCAGCTGCGTGTTTTGAAACAGGGTTTGCCAGTCTCCACCTCACCAATACTTCTTTTAAAAATATGTGGGTTCTCACATGCTTGTGCTTGCACGGAAAACAACTACCTTCTTACCTTCTTACAAGCTAAAGCCAAGTATGGTGACTTCTAACTGGGAGGCTGAGAGCAGAGGGGGACCATGAGTTTGAGGCCAGCCTGGACTGCACAGTTAGAAGAGTGAGTCACTGTCTCAAAAAAACTAAACTAAGAGTTACTCTTGGGCCCTTTATACTTTAAGATCACCAGTAAGTAATCTAGCCAGACTGGGAAGATTAAGAAGACAGTGCAACAATTATTAGCAATTTCTTATTTCTAACACTGCCTTCATGGACAGCGTCAGAAAGCCACAAGAACATCCTCCAATCACCAGTAAGTAATCTAGCCAGACTGGGAAGATTAAGAAGACAGTGCAACAATTATTAGCAATTTCTTATTTCTAACACTGCCTTCATGGACAGCGTCAGAAAGCCACAAGAACATCCTCCAAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAGAACATCCTCCAAATGTGTCCTGTGTGAATAAAACCATGCTGTGGCTGGAGTGTAGCCAGACCATAAGAGCTGGACATGGTGGCACAGGCCTTTAATACCAGCACTTGGGAGGCAGAGGCAGGCAGAGCTCTGTGAGTTTGAGGCCAGCCTGGTCTAGCTACAGAGTTCCAGGACAGCCAAGGCTACAACAGTGAGAATCTGTCTTAGAAAACAAAAGAGGTCCCAGAGCAGCTTCAAGTCCAGAGGTTCTCACTTGCATAGTTGGCAGTGTTTCTATCTGAGAAACATTATTTCTAAACTGTTGTTAACATTTCCTACAG
Seq C2 exon
GACCAAAGCTTTACAAGGAACCTAGCGCAAAATCCAATAAACACATAATACAGAATGCATTAGCTCATTGCTGTTTGGCTGGAAAAGTAAATGAAGGTCAGAAGAAAAAAATATTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008741:ENSRNOT00000060410:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=NA C2=0.425
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
A:
NA
C2:
PF086836=CAMSAP_CKK=FE(30.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]