MmuINT0028497 @ mm9
Intron Retention
Gene
ENSMUSG00000041570 | Camsap1l1
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:138168108-138170442:-
Coord C1 exon
chr1:138170327-138170442
Coord A exon
chr1:138168227-138170326
Coord C2 exon
chr1:138168108-138168226
Length
2100 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
GTTGTAAATGTTTCCTGCAGGAC
3' ss Score
8
Exon sequences
Seq C1 exon
GTCGGAGTCTGTAGAAGGCTTCTTATCTCCAAGTCGTTGTGGCAGTCGGAATGGCGAGAAAGACTGGGAAAACGCATCCACAACTTCTTCGGTGGCTTCTGGAACAGAGTACACAG
Seq A exon
GTTGGTGTGAACGTTCCAAGGGAGATTCCAATTTACCTCGCTAACGAGAACAGGCATGGGGCGGGCGGTACAGGTGGTGCAGGTTTGCATCACAAACACAAGCGTGTGGTACAGCAAGGAAAGGGGTCACTGTGAGGTGCGAGCCTTTCAGTGATGCAGCCCCACTAAGGAGGCAGTGACTCACTCCTGGTGAGTAAGGTAGGTCTCTAAATAGAACTAAAGATAGAACTTAGCTGCCAGCTGCCCATACTACTGGCCACTTCAAAGAAACCTTAGAGAAGTCTCATCAACAAAATATGTTCCTCATGACTATGTGAAGGAAGTCTGTAAGGACTTCATAACTCTCCCTAACATCAAGACTTCAGTTATAATCAGCCTAGGTAACTTAATGAGACTGTCTCAAAATAAAAACAATAAAGCTTATTGGGGGAGTGTTTGCCTAAAATTTGCATGAGGGCTGAGGACCAACATAATGATGATAATGATATCAAGGGAGCCTAAAGGTAAGGGCATCAAATCTAGGAGGTATCATCCTCACTGTCCCTGCTCCCTCCAGCTCCTCTTCCAGCCTCTGTGGGTGGGCAGCACTGACCAAAGCCAGACTAGAGTCTAGAAAGTGAGAGTACAGCTAAAGACCCGGAGCAGAGGCCAGAGTGAGGGGACGAGCACCTGTGTGTGCTGAAGGACCAGGAAGGATACGGGGTAGGGACAGCAGGAGAAGGAGATGGTTCCATGCACCTGCGACGCCTTAGCACACCCTCAGTAGCCAAGAACCAGTTCAAAACTGTATTTACTTTCTGGCTTCCCCCTTCCCCTCTCTATTCTTTAGCTGCTTAGTACAACTTTCTACGGTCTATCTGACAGCCTCTCTTTCCTTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCTTTCTCATTTATTCCATGTGTATGAGTCTTTTGCCCATGTGCATGTCCTCTTTCCACTTGCATGCCTGGTATCTGCATCAGGAAGATATCAGATCCTCTGGGGCTAGAGTTAGAGATGGTTAGGAGCCACTGTGTGGGTTCTGGGATTCAAACCCAGGTACTGTGGAAGAGCCAGCAGCCAGTGCCACCTCTCCAGCCCCAGTCTGACAGCTTTTAGTGTGAGATTGGACAATATTTCCATATTGCTCCCTCTGCCTTTGTAAAGTTGAACAACCCAGAAAAAAACCTGTTTTTCTTCATTTTTGTGTGCACATGCAGAACCAGGAGACAACCAGTATATGCAGGTGGTGCTGCCTTTGGAGTTTTAAACAGGGTCTTGTTAAGTATCCTTGGCTAGCCTTGAACTACCTGAATACTGAATACTGAATCCAGCTGTGTGTTTTTGAAACAGGGTTTCATTTGCCTGTCTCCACCTCACTAATACTTTGTTTTTTTAAAATATAGTGTGGGTCCTAGGGGGTTGAACTGACATCCCTGTGCTTGCAAGAAAAACACTGACTGACTGAGCTCTCTCCCAAGACTACCTTCTGGCCTTTTACAAGCTAAAGCCAAGTATGGTGGCTTCCAATGGTCACCCTCTTCCAATGGTCACCTGAAGAGGGTGACCATGAGTTTGAGGCCAGCCTGGACTTAAAGTAATGTGAGTCAGTCTCAAGAAAGCTAAAGTAAACTAAGGGTTACTCTTGGGCCCGTTATGCTTTAATCTGACAAGTAATCCAGCCAGACTGGGAAGATTAAGGAGACAGTGTAACAGTTATAAGCAATATCTTATTTCTAACACTGCCTTCATGGGACAGCAGCAAAAGGCCACAAGAATATCTTCCAAATGTGTCCTGTGTGAATAAAACCATGTTGTGGCTGGAGTGTAGCCACACCTAAGGGCTGGACATGGTGGTGCGCATCATTAATCCCAACACTTGGAAGGCAGAGGCAGGCAAATCTCTGTGAGTTTGAGGCCAGCCTGGTCTAGCTGGAGAGTTCCAGGACAGTCAAGGCTATTTATCCTCCTTCCGGTCAGAGCTCAGTTCTCACTTGGAGAGTCAGCAGTGTGGCAGCTCCAGCATGGAAAACTGACAGTGTTTCTGTCTTAGAAATGTTATTTCTGTAACTGTTGTAAATGTTTCCTGCAG
Seq C2 exon
GACCAAAGCTTTACAAGGAACCTAGTGCAAAATCCAATAAACACATAATACAGAATGCTTTAGCTCATTGCTGTCTGGCTGGAAAAGTAAATGAAGGTCAGAAGAAAAAAATCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-Camsap1l1:NM_001081360:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.942 A=NA C2=0.367
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
A:
NA
C2:
PF086836=CAMSAP_CKK=FE(30.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: