DreINT0040936 @ danRer10
Intron Retention
Gene
ENSDARG00000062173 | camsap2a
Description
calmodulin regulated spectrin-associated protein family, member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-3016]
Coordinates
chr22:22320596-22323343:-
Coord C1 exon
chr22:22323231-22323343
Coord A exon
chr22:22320715-22323230
Coord C2 exon
chr22:22320596-22320714
Length
2516 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACA
5' ss Score
4.6
3' ss Seq
TCTCAATTTCTTTCCTGCAGGTC
3' ss Score
12.32
Exon sequences
Seq C1 exon
TAGGCCTGACTCAGCAGACGGATGCCTGTCGCCCACCCGCAGCCGTAACGGAGAGAAAGACTGGGAGAACGGTTCAACCACATCATCTCTGACATCCAACACTGAATACACTG
Seq A exon
GTAACAAACAGTCTTAACTGTATTTGAATGCTGCAGTTCCACCTCTAGACCACCAGAGGGAGGTCAATGCCTGTATGTTAATTCTGAGCATTACTCTCTACGTTAGAGCTTTTCTAAGCACCTGTACACTTCGATTAAGTATTTTTGACAAATATAATATATAATATTATATTTAAAATATAATATGAATATGAATAATATGAAAAAAGCACACAATTTACATATGACCATGAAAGGAGACCAGAAAACCACAAAAAAAGCAGCAGATTTTGGTTGATTTCCAATAATGTTACCTACATGTAACTTACTCTTGTTTTAGGAGTTAAGGTATTTGCATACTGAAGTCCGAAATTTTCGTAAGCATTTTTTTTCGTGTTCATATTTGAAAAATTTGTAATTAATCCATTCCTAAAAACTTTAAACATTTCAAACTCATTTCAAGCAGTAATACTTCTCCTCTCTCTTCACCAAAATAGAAAAAGAAAGCGGAATAGGCTACATATTGTGTTCATCCAATACTGCAGAGATGAAGGAGAGTCCTCCTTACAGCCTCAAAGATCTGCGCTGGATTATCTCCAAATGCAAAGTTTATTTCAGGATATCAGTGGACTTTTGATACATTGCTTGATACTTCACAAATTTCATATATAAATAAATCCTGAACAGAGACTGGCAGTACTATAGGCCTAGACATTAAAATAAATGGCGGACGCGTTGACGTATCGATACACGTATAGGATACACGGCTGGCCGGAAGTGTGATAAGCACATCAACATGGCAGCATTTCTTATGACACTGTATAACAATAATGAATATTTTTACAGTACTGTGATGGTTTAGGGTTGGGGTAGGGGTAGACGTTAATAAAATACAATAAATGGGAAATTTAATAAATAATGTAAATCATTTTCGTTAACTTCCAGCCGCAGCCATATCTGATCTAGCAAGAAACCAATGCAATGGACCGTGGTGGACTATGAGGCTTCTAGTTTTCTATTATAATGTCTATGGGGCAGTATGTCAAATGTAGAGACACACACCCTAAACAGCAGCAGGTGCGCAAGTCACTAAATACAGCATATATGGCTTCTCAACGCCACATTTTATTTTATATTATGCACTGTGTTTGTCATAAAGTTATCTGGCTCAAGTAATGGCATTTAGCTTTTTGCTTGTACGGTGGCTCTGAACTGTCAAAAAACCCATCTCAAAGCACTTTCTCCGATGCGATAAACGGAACATACCAATACGATTGACACAAGGTGAGGTCAAACTTATTTTTTAATGTGCGAAAATTAATTTGTATTCAGTGTGCCATAACATTTAGTTTACTGGTGTACTTGCTATTTGGTATACTCGGACTTCAGGGACACTGGGTGTTTAGTTTTTTCTGAAACTTAAGTAGCTCAAACTCACTCATTTTGAGGCGGGACCAGTGCAACAACTTTAATCATGTACACAAGTCAAAACTTTCCATCTGGAGCTTTTTTGCTTGACTCAACACTTGTAAACACTCGCTCTTACGGGTTCCCCCGGCTCTCTGTCCCGCCCACACTTGTGCTACCAAGCCAATCAATCACAGAGTTTGCACTACTCAGCGTTTTGTTGCGATGTGCGAGTCAGCGTCAGCCACGGCGAGGGCTGTGGGACCATGTGCAGGCTGTGCCGGAGCATACGCGTGCGCTTGACGCAGAAGTATAAATCAGCCTGAAGTTCCTATAAATGAGTTCCTATAACTACTGTGTATGAAAGGCCCTTTTTCATTAGAATCAGGACTGATAGGAAAACTATGTGGTTGTTTATAAATTTAATCGCTGTAAAATTAAGCTTATGATTTCAGAAGGTAAAGTTTAAATCCTGCTAGCGTGCTTCAGCATCACATCCCATGATATCTAAGAGTTAGGGTTAATAGATAGACAGTAGGGGGTCTTGTGTGCTTGTCTGAATGCATTCGTCCACAGGAGTGTTAAGACCATGAAATGCCTTAATATCAGGTGTAAACCCGGCTTTATGACCAAACTTTTTACCATCTGATTGTTAATTGGTGACGTATCGGTGACATCTGAAATACTGTTTCCGGGTTCAAATCGCTGCACATTTGATTTGAGAAAATATTTGTTTATGGCCACTTTTTAGTTTTATCACACATTAAAGTGAATTTTATATAAAATGATAGTGTACACATCAGTCTCTGGACTTTCTGCATCGAAAATACCATCATTTTAACAATTTATAAAAAATTTATCACTTTCTGGCCATTGGATATTAGGAATGGATATATATATATATGTATGTATGTATGTATGTATATATTGTGTTCGTGATTTTCGAAAGTATTATATCCCTTTGTAAACGCTTATTACTACTTAACAAGTGCATAATTACACCTGAATACAATATAATTAAATTAAATTAACTTTGTGGGCTCCCTCTAGAGGATTGGAGGGTGAACAGCAGTCTCAGATGATACAGTGGCTTTATATTTTATTATAACTTCTCAATTTCTTTCCTGCAG
Seq C2 exon
GTCCTAAATTATACAAAGAGCCCAGTGCAAAGTCCAACAAGCATATAATTCAGAATGCTTTGGCACATTGCTGTTTGGCTGGCAAAGTCAACGAGGGACAGAAAAACAAGATTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062173:ENSDART00000142947:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=PU(0.8=2.6)
A:
NA
C2:
PF086836=CAMSAP_CKK=FE(30.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]