GgaINT0036856 @ galGal3
Intron Retention
Gene
ENSGALG00000002145 | CAMSAP2
Description
NA
Coordinates
chr8:1378786-1379896:-
Coord C1 exon
chr8:1379781-1379896
Coord A exon
chr8:1378905-1379780
Coord C2 exon
chr8:1378786-1378904
Length
876 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTGTCATTCTTCCCCCACAGGAC
3' ss Score
12.55
Exon sequences
Seq C1 exon
ATCTGAGTCTGTGGAAGGTTTCTTATCTCCAAGTCGCTGTGGTAGTCGTAATGGTGAAAAAGATTGGGAAAATGCATCTACAACTTCTTCAGTTGCCTCTGCTACAGAATATACAG
Seq A exon
GTCAGTGACAACAATATTCAGAAAAGTACCTGTTTATTAGTGGTTCTATGCATGAAAATGCTTTGATTATCTATGTTTGGAATCTTAAAACTTTGTAAGGCTTTGTGAGGTTTTTGTTGCTGTAACCCCAGCAATGAAACTATCTAAAACATGGTTATAATACAAGATGAAAATTAAGTTCAAAATAAAGGTAGTGACTCGGTAGCATTTGTAAACTACAGTTAGGCTCATAACAGCGGGTGGACTCAGAAGTTACTCTGTGCATTTCAATCTGTCTAGTGAGGCAAGAAGAGGTGAAATTTAAGCTCAATTTAGAGTAGTGTGACAAAAAGCAAAAACAAAATTGCAACAGGAAAACAGTTTTCCTAGTGATGTGAATTTAAATATTCTGGGCCCTTGTTTCCAAACAGATCCTTTGTGGTTTATTAAAAACTTCAGTCTGCCTTCCAATTCCTTACTATATTATGAATCAAAAAATAATGGTGTATTCATCCATTTTCTGCAAACGTATACCGTATGATAATGCGAAGACCTTGCACCACCATCACTATAAAGACTGTTTTTGCCCACCAAATATCACATTGTATGGTAAATAGTAAAATAACACTAAGTTTTTGATGTCAGCTGTTAGGGAGTTCATGTTTGACTGCTGGGCCGGTGTAGCTCTATTTGCGATGGCAAACATTTATTAGTAAAGAAAGAATGGCATTAAACTTGTTTGTAAAATTTGTGAACTCTAGACTAATTCTAATTACTCCTGGATTTATGTTTTCACGCATGTAAAAGATTAGTAGCAAAAGTACTTCACAGTATTTAAATTAACTCTTTGCTGGGTTATTGATTAAACTTAGCTGACTTGTCATTCTTCCCCCACAG
Seq C2 exon
GACCAAAGCTTTTCAAAGAGCCCAGTGCTAAATCCAATAAGTATATAATTCAGAATGCTCTGGCACACTGCTGCTTGGCTGGAAAAGTGAATGAAGGTCAAAAGAAAAAGATACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145:ENSGALT00000003364:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.175
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
A:
NA
C2:
PF086836=CAMSAP_CKK=FE(30.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGTCTGTGGAAGGTTTCT
R:
CTCCAGTATCTTTTTCTTTTGACCT
Band lengths:
234-1110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]