BtaINT0031113 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011356 | CAMSAP3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr7:17687484-17687795:+
Coord C1 exon
chr7:17687484-17687596
Coord A exon
chr7:17687597-17687676
Coord C2 exon
chr7:17687677-17687795
Length
80 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
CTCACTGCCCTGCCCCCTAGGTC
3' ss Score
11.26
Exon sequences
Seq C1 exon
GGCTCCATCTCCATCTGGCCTCATGTCCCCAAGCCGCCTGCCCGGCAGCCGCGAACGTGAGTGGGACAATGGCAGCAACGCATCTTCCCCGGCCTCAGTGCCTGAGTATACGG
Seq A exon
GTAGGTGGTAGGACTTTCGGGGGTGGGGGGGTGGTGAGCACCGGCCCCCACCAGTCCCTGCTCACTGCCCTGCCCCCTAG
Seq C2 exon
GTCCGCGGCTGTACAAGGAGCCGAGTGCCAAGTCCAACAAGTTCATCATCCACAATGCCCTGTCACACTGCTGCCTGGCAGGCAAGGTGAATGAGCCACAGAAGAACCGCATTCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011356:ENSBTAT00000015094:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=PU(0.8=2.6)
A:
NA
C2:
PF086836=CAMSAP_CKK=FE(30.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATCTCCATCTGGCCTCA
R:
GTGTGACAGGGCATTGTGGAT
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]