HsaINT0086972 @ hg38
Intron Retention
Gene
ENSG00000076826 | CAMSAP3
Description
calmodulin regulated spectrin associated protein family member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr19:7617326-7617661:+
Coord C1 exon
chr19:7617326-7617438
Coord A exon
chr19:7617439-7617542
Coord C2 exon
chr19:7617543-7617661
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CCCACTGCCTCACCCTCTAGGTC
3' ss Score
11.85
Exon sequences
Seq C1 exon
GGCTCCCTCCCCGTCAGGTCTCATGTCCCCAAGCCGCCTGCCTGGAAGCCGCGAACGGGACTGGGAAAATGGCAGCAATGCCTCCTCCCCAGCGTCAGTGCCCGAGTACACAG
Seq A exon
GTAAGCAGGGGCTCTGGGTGATGTGAGGAGCAACAGGCACCCTCCTCCACAGCCCCTGCTCATTCCTGCTGCCCCCCACCCCCTCCCACTGCCTCACCCTCTAG
Seq C2 exon
GTCCACGGCTGTACAAAGAACCCAGCGCCAAGTCCAACAAGTTCATCATCCACAATGCCCTATCACACTGCTGCCTGGCGGGCAAGGTGAACGAACCGCAGAAGAATCGCATTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076826:ENST00000160298:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=PU(0.8=2.6)
A:
NA
C2:
PF086836=CAMSAP_CKK=FE(30.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCGTCAGGTCTCATGTC
R:
ATGCGATTCTTCTGCGGTTCG
Band lengths:
219-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development