DreINT0005706 @ danRer10
Intron Retention
Gene
ENSDARG00000091359 | CAMSAP3 (2 of 2)
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr1:58396247-58396556:-
Coord C1 exon
chr1:58396438-58396556
Coord A exon
chr1:58396366-58396437
Coord C2 exon
chr1:58396247-58396365
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TAAACCACCTCTCTTTTTAGGTC
3' ss Score
10.86
Exon sequences
Seq C1 exon
TCGTTTAGAGTCACCCTCAAAGGTGATGTCATCAGGACTGCTGGCCAGTCAGAATGGAGAGAAAGACTGTGAACAAGCCTCCAACGCCTCCTCTCCAGCATCACTCCCAGAATACACAG
Seq A exon
GTAAAAGACAACATGGTGAATTTTTCTAAGTGAAGTTTAAGACAAATGTGACTAAACCACCTCTCTTTTTAG
Seq C2 exon
GTCCTAAATTGTTTAAGGAGCCCAGTTTTAAATCCAACAAGTTCATCATTCACAGTGCGCTCTCACGCTGCTGCCTTGCTGGCAAAGTCAACGAATCCCAGAAGAACAAGATCATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091359:ENSDART00000128742:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.951 A=NA C2=0.150
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=PU(0.8=2.4)
A:
NA
C2:
PF086836=CAMSAP_CKK=FE(29.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAGTCAGAATGGAGAGA
R:
TGGGATTCGTTGACTTTGCCA
Band lengths:
178-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]