MmuINT0002332 @ mm10
Intron Retention
Gene
ENSMUSG00000044433 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:MGI Symbol;Acc:MGI:1916947]
Coordinates
chr8:3608189-3608512:+
Coord C1 exon
chr8:3608189-3608301
Coord A exon
chr8:3608302-3608393
Coord C2 exon
chr8:3608394-3608512
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GCTGACTGACTGCCCTCCAGGTC
3' ss Score
6.83
Exon sequences
Seq C1 exon
GGCCCCTTCTCCATCAGGCCTCATGTCTCCAAGCCGCCTGCCTGGCAGTCGAGAACGTGACTGGGAGAATGGAAGCAATGCATCCTCCCCAGCATCAGTGCCTGAGTACACAG
Seq A exon
GTAAGTGAGACCGGGTAATGTTAGAAGCTACGCGTTCTCTACCTGCCTTTCCCCAACCCACGCCCAGTCTCTGCTGACTGACTGCCCTCCAG
Seq C2 exon
GTCCCCGGCTATACAAGGAACCCAGCGCCAAGTCTAACAAGTTTATCATCCACAATGCCTTGTCACACTGCTGCCTGGCAGGCAAGGTGAATGAGCCCCAGAAGAACAGAATTCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044433:ENSMUST00000171962:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=PU(0.8=2.6)
A:
NA
C2:
PF086836=CAMSAP_CKK=FE(30.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGAACGTGACTGGGAGAA
R:
TCTTCTGGGGCTCATTCACCT
Band lengths:
170-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types