RnoINT0028799 @ rn6
Intron Retention
Gene
ENSRNOG00000000986 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:RGD Symbol;Acc:1597412]
Coordinates
chr12:2156465-2156787:+
Coord C1 exon
chr12:2156465-2156577
Coord A exon
chr12:2156578-2156668
Coord C2 exon
chr12:2156669-2156787
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACTGACTGACTGCCCTCCAGGTC
3' ss Score
7.95
Exon sequences
Seq C1 exon
GGCCCCTTCTCCATCAGGCCTCATGTCGCCCAGCCGCCTGCCTGGCAGTCGAGAACGTGACTGGGAGAATGGGAGCAATGCTTCCTCCCCAGCATCAGTGCCTGAGTACACAG
Seq A exon
GTAAGTGGGGCCGAGTACTGTGAGAAGTTAATGGTCTCCCTGCCTTTCCTCAACCTGTGCTCTCCCCACTGACTGACTGACTGCCCTCCAG
Seq C2 exon
GTCCCCGACTCTACAAAGAACCCAGCGCCAAGTCCAACAAGTTCATCATCCACAATGCCCTGTCACACTGCTGCCTGGCAGGCAAGGTGAATGAGCCGCAGAAGAACAGAATTCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000986:ENSRNOT00000001305:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF086836=CAMSAP_CKK=PU(0.8=2.6)
A:
NA
C2:
PF086836=CAMSAP_CKK=FE(30.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGAACGTGACTGGGAGAA
R:
CTTCTGCGGCTCATTCACCTT
Band lengths:
169-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]