BtaINT0031302 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008946 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr11:69114849-69117132:+
Coord C1 exon
chr11:69114849-69114860
Coord A exon
chr11:69114861-69116929
Coord C2 exon
chr11:69116930-69117132
Length
2069 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CAACATCCCATCTCCTCTAGTTC
3' ss Score
6.09
Exon sequences
Seq C1 exon
GTCGACTATCAG
Seq A exon
GTATGGCCACCGCCCTTGCCATCTGTCGTTACTGCTATGCCTCTTCCAACACCCTTGACCTCCATGTGTCTCTCGCTGTTCGGTGGCTGCCAGTTCAGTCTTGCTATGTCCTGCAGCAGACATAAGCTTAGAACTTCCAAACAGGTCAACAACACAGGAAATATTTCAGCTGTGCTCATCTAAAGCTGGATTCCTTGGGTTGTTCTCTGGCTTGACGTCCCAGAGAGGCTGCAACCATGAAAACATCCTCAACATTTGGCCCCTGATAGATAAGATTGATGCTGCTGATTCCTTCTAAGATGAGAGACAGGACTAATGGGTATTTTTAGCCTCTTGTATTCTTTTTCAGCCCCCAAACCCACCACAACTAGGATGCATGCAACGCAAATACAAGCTCAAGGCATGTCCTCCAACCCTTCTTACAACCACATCACCGCCACCACCCTCCTGCCAGCTGCTGCCACCACTATGACCCCACCCCCCACCCCAGTAAATATTGTGGCTTGGCATGGGTGAAAGGTGACCCAAATATGGGTAAGGATGGAGAAGGAAAGACAGAGTTTGGGAAACCTAACCTCACAGGTACTCAGACCACTTAAATAGATGTGTGCTCTGTGGTGCTGTTATTGCCAAAGGGAGGTGCATGTGACCAGACCGAGGATGGAAGGGAGAAGAGATGGAGCAGCGTGGAGCCACAGTCAATGAGTAGTGACTGCAGCCTGCTGGCAGGTCCAGAGACCCTCCTCCAGACCTCCCAGAGGTGCCGCGATGGAGAGACAGAGGCTGGGATAAGAGCCTCTGAGCAGGAGACACACAGAAGCCCAGGCAGACTGCAGACAGCAAGGCCTGTCTGTCACAGTGGCGGCACAGCCACAGAGCTGCATTTAGGGTCTGACTCTGGTTCTCAGCATACCAGTCATGAAATTAGAACTTCTGGAAGGACTTCAAGGGCAGCACTCAAGTGCAAGAAACAGGTCAGGGTTCTAGTTCTCACAGCTGGAGAATGAAATGAGGACTTGATTAAAGAAAAGGCATGAGCCCCTTCCCTGGAATTACAGGGTCAGGTCTTGTGATTGTAGGAGGCTCAAAGCCCACACACCTCTGTACATACTGCCTCCCCCTGTGTGTGTGCGCACACACACACACACACACACACACACGCACGCAGAACAGTGCTGACTCTGGAGAACTGATCTCATCGTTGATTTTGCCAGAAAGGCCCAAGCGAGGTAGGCTCCAAACCTACTGGGGCTGCTGCTGCTGTCAGCAGAACCACTGTGGAGCCTCAGCCGAGCTCCCTGCTGCTCAATAGCCACCGTGGTCTCCTCGTACAGCCCAGCCTGGTCCCCAGCCCCTGCAGAGAACCTCTCCCGTCTCCGTTTCCCCCCAAGGCAGAGCTCACAAGTAGTCATTTCACGCTGCGTGATCATTCTAAATGGAATCCCAATCTCAACTGTATTGGGGAAAATTTATTTAGTAAAGGGTTTTTATTATGTAATAGGTATGTGACATCCGGTAATAGGAACTGCATTATATTTTATTGTTTTGTCTCTAAGCAAATATTGAAATAAAAGGAAAATGATCAGGGCCTATTATTCTCCAGTGAGAAGGCATTTCAGGACTTCACTGGAAGGACCAGAGGGAGTGAAAGGCCCCCAGCTGCAAGTGCTTCAGGGGTCCAAGAGCGCTTTGCAAAAGAGCCCAGGGAGAAGGGACTTGAGGGGCTCTGAAGGTAATCTAGGACTGGAAGAATCTCACTAGTTTTCATGGAATTCGTCTTTATATATAAGCAGAGCGATAAACCCAGAAGCCCAGGATGCTGTAAGATTTAATGAGGTAAAACCATGTACCATATTTCCTTGCATTCATTGCAGTGTTAGCATCTATATTAAATAACAGTCTGAACTCTATTGCATTTTGAGACTTCAGGTAAGCAACTGTGTCTCCCTTTTCAGGGCCTGTAGGGCTGTTCTGAGGGATAGTGAGGGGCCTGGGAGGTGGGGGTTCTCTCCCAGTGTCTGGGGCCCATAGACATAGGGGGTTTCTCACCAACATCCCATCTCCTCTAG
Seq C2 exon
TTCCAGCACTTCCAAGACAGATTGCCATCCACCTTCTTCTCCCAATTCAGAATTGCTGAGAAGGGCATTGTGTCTGAAACCACGTGCAACCTCACAGAGTGCTTCAGTCTGAGCCCCGGGACCTACGTGGTGGTCGTCTCCGAGGGCAGAGAAGCTGTTGAATTCTTGCTCCGAATCTTCCTGAAGATGCCAAACAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008946:ENSBTAT00000044473:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(2.2=100)
A:
NA
C2:
PF0106717=Calpain_III=FE(49.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development