MmuINT0028711 @ mm9
Intron Retention
Gene
ENSMUSG00000043705 | Capn13
Description
calpain 13 [Source:MGI Symbol;Acc:MGI:2685789]
Coordinates
chr17:73680317-73681334:-
Coord C1 exon
chr17:73681329-73681334
Coord A exon
chr17:73680522-73681328
Coord C2 exon
chr17:73680317-73680521
Length
807 bp
Sequences
Splice sites
5' ss Seq
CCCTGTTCT
5' ss Score
-33.91
3' ss Seq
ATAATAATCTCATTTCTTCTAGT
3' ss Score
-9.06
Exon sequences
Seq C1 exon
TGCCCC
Seq A exon
TGTTCTTCCCCCAAGGCAGAGCCTATCAATAACCATTTCATGCTGCATAACCATTCTAAATGGAATCGCCATGCTCATATGTAGTAGGAAAATTTGTTTAGTAAGGGGTTTTTATTATATAATATGTATGTGACATCTGGTAATAGGAAATGCGTTATATTTATTGTTTTATCTGTAAGAAAATTTGAAATAAAAGGGAAAATGATTGAGACCCATTATTTTCCAATGAGAAGGAATCCCGGGGCTCTTGCTGGGGAGATGAAAGCGAGGGAGAGGAGAAAATTCAACCCTGCAGTTGTATGGCAGCATATGATTAAAGGTTTAGTGGAGACATAGCTTTGGGGACGCCAGAAGAAATTCAACACTGGAACAATGTCACTAGTCCCCATGTCTTGTTTGTGCATAAATAAGAGAGAAAACAAGAACCCCAGGATGCTATTAGATTAGTGAGATAAAATCACCTGTCAAATTTTTGCGCATCCACTGTAGTGTCTAGAGTCTGCCAACTCCAGCCTTCTGACATTGCAACATGATTTTGTCATCTACAAATGTGTCAGGCCACATCCATAGCTGGGACTCACGTGGCCACAGATAACGGGCAGGGTGGGACACACCTGGCAGATAAGATACTGTTGTGTGTGTGTGGGGGGGGGGGGGACGTGGTATTTTAAATTTTGAATCTGAGTCAGCACTATGTCCTTTTCCGGAGCTTATAATGCTGTTCCGGTGAGCAGAGAAGGGCATAGAAGGGAATTTCCTGTCCTAGTGGTATAGAAGGGGCTTTCTCATAATAATCTCATTTCTTCT
Seq C2 exon
AGTTCCAGAATGTCCAGGGAAGATTGCCTCCTGCATTTTTCTCCCCATTTAGAAGTGCTGCCCAAGGCACAAAGTATGTGTCCAAGTGCAACTTCACAAAGTCCTTCCACCTGAATCCTGGTACCTATGTAGTGGTTACCACAGCAAACGGAAAAGAAGTGGAATTCCTACTCCGAATATTCCTCAAAATGCCAGACAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043705-Capn13:NM_001033444:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0106717=Calpain_III=FE(48.9=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: