BtaINT0031305 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008946 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr11:69118785-69120519:+
Coord C1 exon
chr11:69118785-69118841
Coord A exon
chr11:69118842-69120461
Coord C2 exon
chr11:69120462-69120519
Length
1620 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CCCTTCCTCATTTGGAGCAGGGG
3' ss Score
4.38
Exon sequences
Seq C1 exon
GCAAGTCTTCCAGAAAATGGGTCCCAGCAGAGCATTTTCTACAAGTACGCTCAGCAG
Seq A exon
GTACTGTACTTAGCAACATGGCCATGAGGGGCCCTGCCTAGGACAGGGATGAAGAGGTGAGAGGAAAGAAAGCCTCTCCCAGGTCCTTACCAGGCCAGAGAGGAAGATTACTGGCCTCTCTCCCTGGATGCCACCAGAACTGATCCGGGGAGACGGGATGCCCCAATTGGGTGACATCTGGGGTGAAGTGTAGTTTTGAAAGGGAGGGGCTCCTTATAGGAGGGTGAGATGTATAAATCTTTTAACAAGCCGTCGGCAATGCCCCTGAAAATCTTCCCTTCTCCCGTTCTGCCGCCTCCCACTGCCATTGGCACCCTTCCTCCTGGGAGCTGGCCAGCTTTCAGAAGGCACCACTAGCCTTCTTCCTGCCAAGCCACCTATGTGCACAAGGGATTTTCTTAATGGTTTAATAAGCTGTTATAAAGATCCTTGACTTGTCAGGAGAAAAACAGCTGCCAAGGGCTCCACACGATGGGCCTCTTACCATTAGTCATCATGTCAGTGTGGAAACAGAAAGCCATATGGGTGACCGTATGCCCTGAACTGGCCTCGGGAAGACAGGTGGGCAGTTCTCGGGCCCTTGCTGTGTCAGACAGGTGGCCTCCTTCCACAGAAATGTGGGTTCCCAGAAGACCCCCAAGGAGGCGTCTTCTCCCCCCTGACCTCGTGGTGCTCTGCAGAGCCACTGCTGGAGCCCTCTCGCCAGCTCCTTCTCCCGTGGGACAAGCTTTCCCAGCGTGGTGACATCTCATTATGCCCTCGCTTTTACCAGGCTGGGTGTGAGAAACACCTGCATGGGGAACAGCTCTGCTTCTCCATAAAATCATCATGGAAGCCACTGCCTGTAAAGCTGGTCAGGGTCCCCAACAGAAAAGGGAAGGCAGTTAACACCTTCAGGAGTTCAAGCCAGGAAGAGCGTCTCGCCCCTCAACCTCTGTTGCTTCCTGTTTTTCATCCAAGGGAAACCATGATGTCTCCCTTTCTGGCTTCTGTGGCTGGGAAGATGAATGCTAAGTCATGTGCTCAGCGAGAGCAGCTTCTCTTAGCCTGGATTCCTGACACGTGTCTCTTCTCACCACACACACACACAACACACAGTAGCCGTGTCTTCTCTCACTCCCATCTTTCTGGAAGCAGATGGGGACACACACCTGCAGGGCGGAATTGATTCATTCAGCAATACTTCTCCCGAGGGGCTCCCAAGTGCCTGGTATGATAGGGAGGAAGCAAACACTGCTTTCAGCCCAATAATGGATACAGAGAGAAATGCAAGGTGACCCTCACCGGGAACCAAGTGTCAGGAGTGATCAGCACTGCAGATGTTCAGGGAGGGAGCTATGGCCTGGAGCAATCAGGAAAGGCTTCATGGGAATTCCCTGGAGCCCTGGTGGTTAGGATTCCATGCTTTCACTGCTGAGGGCACAGGTTCGATCCCTGGTGAGGTAACTGAGATCTCAAGTCGCGCCGCGTGGCCAAAAAGAAAAAGGAAAGGCTTCATGACAAAGGTGAGATGGGAACTTAAGTGCTCAGACACCCCAGTGCTTTCACAGTCAGGCAGGCATGGCCCCTCAGTTCCTGGGCACTGATGTGATTCCTGCATCCCTTCCTCATTTGGAGCAG
Seq C2 exon
GGGCTGGACATTGATGCTACGCAGCTTCAGAGCCTTCTCAACCGGGAATTCCTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008946:ENSBTAT00000044473:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=PD(0.1=0.0)
A:
NA
C2:
PF138331=EF-hand_8=PU(30.4=85.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development