BtaINT0031307 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008946 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr11:69120613-69122654:+
Coord C1 exon
chr11:69120613-69120671
Coord A exon
chr11:69120672-69122585
Coord C2 exon
chr11:69122586-69122654
Length
1914 bp
Sequences
Splice sites
5' ss Seq
GATGTATCC
5' ss Score
1.64
3' ss Seq
GACTCTTAACTCCCCACCAGCTG
3' ss Score
4.69
Exon sequences
Seq C1 exon
GACCTCCAGGGGACCCGTTCTCCTTGGATGAGTGCCGCAGCCTCGTGGCTCTGATGGAT
Seq A exon
GTATCCTTTGCAGTCACCATCCACCCCCCACTGCCTCCCAGCACTGAGAGCCTGTCTGCTCCATCATCTTCCCCAAGGATCTAACTGGGACAGTAGAGAATCTTTTTTCACTCTGTTTTCTCTTCTTCCTTGGTTCTAAGGGCTCACCAAAGAGCCTGGGCTTCTGGGGACTCTGCACAAACTCACTAACTCTCTAGAACCACCATAGCAACAACAACAACACTTACTATCTATCAAGTGTCTACTGCATACCCAGAATGGTACTGATAGATATTTTTTCCCTTGTAGTTCTTGCAAGAATCTCTGTGATATAAGAAGTATTGTCCCATGGTACAATGGAAGAAACGGGTTCAGAGAGGTTTAGTCATTCACCCAGATCGCACAGCTAGTCAGGATTTGTGCCTAGATTTGGACTTGAAGTTTTCAGCTTCCAAAGCCCATGTTCTAATCGTATTCTTCACTGCTTAGCAAAGGATAGTATCCTAACTTCTTTACTTCTACCCCTCTCCTTACCACTATTTAAATCCCTTGCTCAACAAACCCCCAGTTCAATAAAGGTAACAACCACCAAAGTGAAAGTCGCTCAGTCGTGTCCAACTCTTTGTGACCTTGTGGACTATACAGTCCATCCAGCTAATGGAGGAAATCCTAGGTCTGCATGGCAGTTACACCCTGTTATTACTATTCTGTTGCATTGACAGATGAGACTGGGCTGGGCAGTGCAGTGACTTGCCCTAGTTCTGTGGCCACAAGTGGCTGGACTGGGACCCAAGCCCAGAATCTTCTGCCTCCCATCCTGACTTCCACTCCCCTGGGAGCCATTTCTCCCCTGCCACTCCATCTCCCCGCTGGTGGGCATATCCCTCAGGGGTCACCTTGCAACTCTCCCCTCGCTATGCACTGTCTCCCTGAGGAGACACAGATCCCCCAGCTCTTTCACTCTTAACAAGGCTCTACTGGGGACATGAAGCTGGGCATTGTCGAACAAGAGCCATCTTGATGAACTCATCAGTCAGGCCCTGTCTCTTGACTGTTGTATAGAATCACTCGGAGACACTGCTCATCCTTGCAGATAAATCAGAATGGCACTCAGGAGCCCTGCAGCCTAGGGCAGGTAACCCCAGAGGAGGTCATGTCTGCTGGACCCCTGAGCAGAAGACCAGTCTTTTCTACCCTTCCTTCTGCTCACCCGTCAGCTCCCCTCCAGTGCCACAGAGATCCGTTCTTTCCATTAGTTCTCATTAAACTCTTGGTAAGGAAGGACCAGGCTTCCTTGGTGGCTCAGATGGTAAAGAATCCACCTGAAATGTGGGAGACCTTGGTTCGATCCCCAGGTTGGGAAGATTCCCTGGAGAAGGGTATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCCATGGACAGAGGAGTCTGGCGGGCTGCAGTTCATGGGGTCACAAAGAGTCGGACATGACTCGGCAACTAAGCACAGCACACAGCGTGGAGGGACCAGGGCTGGCTTTAATACCCAGAATATGGTCCATCCATGGCCGCACACTTAGCACATGTGCTCATCTCTCAGCCCACCTCAGGAGTTGCAGTCACCTCCCCACACTGCTGCTTCCCACTCCCCTCTACAAGGGGGACCCACCCCAACTGGTGAAGGCTGTGTTTGGGGTTCAACCTCTTTCCATGGGTGCAAATGACGTTGGCATCCCTTTCTCAGGGCTGCCTTCTTCCAATTGCCCATTTTCTCCTGTGAAATGAATCTAAGCCAGGTCTCTTTTAGATGCATCAGAGCCAGCTGGCGTGGGGTCACATCCAGGTGACTCTGGACCGCCTGTGTTACTAGGTGACGGATGGAGCCTCTCCATGCCTGAGGCCCCTCTGCTCACTGCACACAAGACTGCTTGACTCTTAACTCCCCACCAG
Seq C2 exon
CTGAAGGTGAACGGGCGACTTGACCAGGAGGAGTTTTCAAGGCTGTGGAGCCGTCTCGTCCACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008946:ENSBTAT00000044473:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(33.9=100)
A:
NA
C2:
PF138331=EF-hand_8=PD(32.1=78.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development