BtaINT0034911 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009586 | CDC25A
Description
Bos taurus cell division cycle 25 homolog A (S. pombe) (CDC25A), mRNA. [Source:RefSeq mRNA;Acc:NM_001101100]
Coordinates
chr22:52252244-52253310:+
Coord C1 exon
chr22:52252244-52252375
Coord A exon
chr22:52252376-52253235
Coord C2 exon
chr22:52253236-52253310
Length
860 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
CACAGTTTTTCTTTGTTTAGAAT
3' ss Score
6.45
Exon sequences
Seq C1 exon
CTTTCCTCAAATGAAAGAGATGGCAATGAACCAGGGAATTCCATTCCTTTTATGCCCCAGTCACCTGTGACTCCCACTTTGTCTGATGAGGATGATGGCTTCATGGATCTTCTTGATGGAGAGAATTTGAAG
Seq A exon
GTATGGTGTGAGTGTGTGCTTTCTGATCCATTTTTACTAACTTTCCCTGGAGAGCCGTCATCTGAAAAAGAACAGTGATCCCCCAACCGACTGATACTTTTTAAGGTTTCATTTACTTATTTAATTCATTTTTGGCTGTACGTGTTCTTTGTTGCGGCACCTGGGCTTTCTCTAGTTGCAGTGAGCTGGGACGACTATTCCGTTGCGGTGCGCGGGCTTCTCACTGTGGTGGCTTCTCTCGTGGAGCACAGGCTCTAGGCGCATGGATTTCAGTAGTTGCGGCTCGTGGGCTCCAGAGCACGAGCTCTGTAGTTGTGGTCCACAGGCTCAACTGCTCCACAGCATGTGGAGTCTTCCCAGGCCAGCGGTTGAACCTGTGTCCCTTGCATTGCAAGGAGGATTCTTAACCACTGGACCACCAGGGGAAGCCGTGGCTGATGCTTTTATTCATCTGTTGGGAACTTATTGAGACTCTGCTTCTAGCCTGATTAAATTCTATGGAGGTGTTCCAAAGAAAACACTGATGTGATCCTTCCTCCCCTGCAGGAGCTGACAATCTTTTTTTTTTTTTTCCTGGAAGGAATGAATCAGGGACTGAAAGAATAGCTGCCGTGTGATGTAAAGCTGAGGAGACCAGTGGCTCCTCATGGCCCCTCAGGGGCATTCCCTTAGCTATGCTCAGATAGCATCACTCTTACTCTCTTGACCTTAAAATGTTGTGGAGAGGGGAGGCATTAACCCTTAGAAGACTTCCTATTCACGCCTTTCTGGTATTCTGCAAGAAGAAATCTAACACATTTTAACTAATGTTGTTTCTAATGGACCTTTGGACCTTTATGACACAGTTTTTCTTTGTTTAG
Seq C2 exon
AATGATGAAGAGACCCCATCCTGCATGGCCAGCCTCTGGACAGCTCCCCTTGTCATGAGAAGAACTAATAACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009586:ENSBTAT00000012611:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.520
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(17.5=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(9.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTCAAATGAAAGAGATGGCA
R:
TAGTTCTTCTCATGACAAGGGGA
Band lengths:
198-1058
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]