GgaINT0090383 @ galGal3
Intron Retention
Gene
ENSGALG00000004934 | CDC25A
Description
NA
Coordinates
chr2:479096-479924:+
Coord C1 exon
chr2:479096-479230
Coord A exon
chr2:479231-479849
Coord C2 exon
chr2:479850-479924
Length
619 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
GAAATTTCTTTGTTTCTTAGAAT
3' ss Score
7.31
Exon sequences
Seq C1 exon
TTTCCCACTCAAGAAATGCCCACGGGTGAACTGGAAAACTACGGGCCAGCTTTCCTGCAGCAGTCTTCTCTGACTTCCTCTGAAAGCGAAGATGACGACGGATTCCTGGAGCTCTTAGATGAGCAAGATCTGAAA
Seq A exon
GTAGGTACCAAAGAAATGTGCTGCTCTTCTAAACTCAGCTCTGTGTACTGTGGAGGTTGCAGCACATGCACATTCTGGTGGTGATTCAGACTGCAGGTAGGCAGGCACGAGGGATTCCTGAAAGACTCAGTTATGGTTCTCAACTCTTCCACTGTAGCTGTTTTTATGCGCTGTTCCCTAGTGCAAACAGTGGGATTTGCTTGGTGTGTGAACAGCAGTTAGAGAGGTATTGCTGCTTTTCCTACTAGTATTTGAACTGTGAGGCTATAGAGGATGATTGGAAGAGTTGGCATTTTCTTTAGAAACTCTCTGAGGGAGCTAAAGGTAATATTTGTTTTCAGATCACTTAAATAAAAGTCCAGTCCCTAGCTGAACTCGACATGCTTAAGGCTTTGGAAGGGCATTGTTAATAATCAATGAATGAATTGATTTAACTCATCCTTTCCAATGTGGCTCAACTCATCACTCAGTGCAATAACAGAGTTGGTAATGGAGTCCTTAAAGCTGCTCAGGCAGCTGAATTCAGCTGGAAAGTTTGCCCAAGCTTACAGGAGCCTCGGGTATTTACAGTGTCTGTCAGCAGGGAGACAGATGAGAGTGAAATTTCTTTGTTTCTTAG
Seq C2 exon
AATGATGAGGAGATGCCCTCTGATGTGGCGAGCCTCTGGACTGCGCCGCTGGTCACCAGGAGGCCGGACAGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934:ENSGALT00000007893:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.840
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(17.7=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCACTCAAGAAATGCCCAC
R:
GACTGTCCGGCCTCCTGG
Band lengths:
206-825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]