MmuINT0032736 @ mm10
Intron Retention
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25A [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109883489-109884193:+
Coord C1 exon
chr9:109883489-109883614
Coord A exon
chr9:109883615-109884118
Coord C2 exon
chr9:109884119-109884193
Length
504 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
GCAGTTTTCTCTTGCTCTAGAAT
3' ss Score
7.28
Exon sequences
Seq C1 exon
CTATCTTCAAATGAAAGTGAATCAGGAAATTTCAGTCCTCTTTTTATACCCCAGTCACCTGTAAAAGCCACTTTGTCCGATGAGGATGATGGCTTCATAGACCTTCTGGATGGCGAGAATATGAAG
Seq A exon
GTACAGTCTGTGGGTGTGGGCGTGTCTGTTCATTCTAACCAGCCTGCAGAAGCCTCCTAAAAAACAGTTCATTTTGTGAGAGTTCATTGAGTCTTCTGTCTGTTTGACTAAATCCAGCAGGGTGATAGGTCAGATAATACTGGTAAGATCTTTCTCCTTACCCTGAGGGACACTAACGATAGGGAAGGAGAAAGGTTTTGAGATACTTCTGGAACTAAGATATAGCATGTGCTTAGGGGAGTGTACAAGGCCTTAGGCTCAATCAATCCCTTGTACCAAGAAGAAACAGGCCTGCTCTGGTGTTCCATGCCAGAAATTTTAACATTCAGGATGCTAGCCAAACACAGTAAGACTCTGTCTCCAAAACAAAACACAAAACTTCTTATCTAGGCTTATCTGGCATTTCTTAGGAGAGTTACCTGCAAAACATTTGGTTGCTGGGTCTTTTTCTTCTTCCTAGCCCCTCTGCTAGATGTATTTAAAAGCAGTTTTCTCTTGCTCTAG
Seq C2 exon
AATGATGAGGAGACCCCATCATGCATGGCAAGCCTCTGGACAGCTCCCCTTGTCATGAGGAGACCTGCAAACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477:ENSMUST00000094324:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.893 A=NA C2=0.532
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(17.4=100)
A:
NA
C2:
PF066178=M-inducer_phosp=PU(24.8=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAAATGAAAGTGAATCAGGAA
R:
AAGGTTTGCAGGTCTCCTCATG
Band lengths:
198-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types