DreINT0043714 @ danRer10
Intron Retention
Gene
ENSDARG00000010792 | cdc25b
Description
cell division cycle 25B [Source:ZFIN;Acc:ZDB-GENE-000330-5]
Coordinates
chr13:14790642-14791747:-
Coord C1 exon
chr13:14791613-14791747
Coord A exon
chr13:14790723-14791612
Coord C2 exon
chr13:14790642-14790722
Length
890 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACT
5' ss Score
5.88
3' ss Seq
TTTTTTTTTTTTTTTCTCAGAAT
3' ss Score
10.8
Exon sequences
Seq C1 exon
CTCTCCCCACCACCCACCAATCAGCCAGACTCTCCAAATGAAATCAGTCCCTTCATTCTGCGCCGTCCGTCGCTCTCCTGCCTTCAAGATGATGATGACGATGATGGCTTTCTGGAGGGGCTTGATGATGTGGAG
Seq A exon
GTGACTTTTCCATTAGCCTGTGCTTGTTGTGTTGTCAAAAGTATTGATATTTTGATTAAACGCTGATTCTGAAATAATTTGAAAAGTGAAATCGTATCTACAGCTTTTTAAAACTCACTGTAAGAGAAACATAAGCACCCACAGTTCCCCACTTTTCCCACACATTTGCATTTCAGGATGCTTAACATTATTTTGGTATCACAGCCCAAAAGAGGTTTTAGTGGCTCATTCCACAGTTAATGCTTCAAAGACCATGCGCATTTCTGGTTTTATTAGTTTAAACATTAAGCACAAATGCAGTACAGAAATCTGTTTTGGTTTGTTTGTGCATCTCTCTGAGTGCACATATGCCAAGTTGTCCCCATGATCTTGGACTTCAATGTGTATTAATTTGCCAGCTAATGCCAAAATTGCTCCTAAAAGGCAGTCTAAAGCAAACTAGTGAGAGAAATTTCTCAAAGTAATAGCCTTCATTAACATAAATCAATAACAGAAAAGACGATCACAATTAAACCTGCCTGAAGAATAGCGTTTAGTTTATTTATTGGTTGTAGTCAATGTTTTCAGTAATTTGACTTCATAAGGCTAGTTAGTTTGCCTAGTAGTTTTTTAAAGAAATATTAATTTTACGTTGTGGTGGTGTTTTTAGCATAGCCTGTGAGAAATGAAGGAACAACGAAAGTTGAAAGAATTGACCACCATGGACCAGTATTAACAATTCTTAACACTGAGCTTGAAGTTTAAAAAAAAATAAAAAATAGTTAAATGACAATTTTATTGAAAGCATTTTTTTGTCATCAAGTATTTAACTTTTTTAGAGATGCTGTATTTAAGGTAGAAATTTTTAGTATCTTCACAGTACTATGGTCTTTTTTTTTTTTTTTTCTCAG
Seq C2 exon
AATGACTCTGAGGTTCCTCTGGGAATGGACAGTCTTCTAACTGCTCCTCTGGTGGCCAAGCAAATTCCTGAAACTGATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010792:ENSDART00000020576:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.752 A=NA C2=0.926
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(16.7=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(9.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCCCACCACCCACC
R:
AATCAGTTTCAGGAATTTGCTTGGC
Band lengths:
214-1104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]