RnoINT0032518 @ rn6
Intron Retention
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123737070-123737670:+
Coord C1 exon
chr3:123737070-123737201
Coord A exon
chr3:123737202-123737589
Coord C2 exon
chr3:123737590-123737670
Length
388 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CCTTACTGCTTTGACCTCAGGAT
3' ss Score
7.58
Exon sequences
Seq C1 exon
TGTCTTACCACTGACGGGAAGATGGACGTGGAGGAGGCGAGCCCTGTGGCACAGTCTTCCTCCTTGACTCCTGTCGAAAGGGCTTGTGAAGAAGATGACGGATTTGTGGACATCCTAGAGAGTGATTTAAAG
Seq A exon
GTAAACAGCCTTGGTCCACAAGGCCCCTACTTGCTCCCTGCTTGGATAGTCCAGACTATCAGCCAGACTCCAACCTCACCCAATGTCAGAAGAATTTGAGGGAACTGATATTGGCCAATCAGAAGACCAGGTGGGCTGGTGCTGCAGAGGAATGGAGGCTAGGCATGATGAAGGTACTTCTGGGTCAGGGCAAGCCCAGCGGCAGCAGCAGCTGGTGTTTGTACAGCTCTTTTTGTGTGTGTGTTGGGGGTGGGGTGGGGCAGTGTTGCTGCCATAGTCAGCAGGGCTGGGGACAACCAGTGTTTCTTTGGGAGTAAGCAAGAGAAGACTCTCCACCATTTACTCCATGCTTGAGTTTGTGATTCTGTCCTTACTGCTTTGACCTCAG
Seq C2 exon
GATGATGATATGGTCCCCGCAGGCATGGAGAACCTCATTAGTGCTCCACTGGTCAAAAAGCTGGATAAGGAAGAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248:ENSRNOT00000051064:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.659 A=NA C2=0.296
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(16.0=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCACTGACGGGAAGATGGA
R:
CTGTTCCTCTTCCTTATCCAGCT
Band lengths:
208-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]