BtaINT0034925 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51858118-51858784:-
Coord C1 exon
chr13:51858650-51858784
Coord A exon
chr13:51858199-51858649
Coord C2 exon
chr13:51858118-51858198
Length
451 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CCTTGCTGATCTGGCCTCAGGAA
3' ss Score
7.56
Exon sequences
Seq C1 exon
TGTCTCACCCCTGAGCGGAAGATGGAAGTCGAGGAACTGATCCCCCTGGCCCGATGCCAGTTCTCCGTGACCCCCTCCACAGGGGCTGTTGAGGAAGACGATGGATTCGTGGATATCCTGGAGACGGACTTAAAG
Seq A exon
GTAAACAGCCTTGCCTTGTCAGGCCCCCTACCTCTCCCTTCCTGAGATCTCCTGAAAGAGGTAAGCTCTGAGCTCCTACAGCAAGACTATGACCTCATTTCAATGTCAGAAGAACTGGAGGTAACTGAGTCACAGCCTGACCTCTGGCCAATCAGAGAAGAGGAAGTGGCTGGTGCTGCAGTGGAGGGTGGATGGGCAGGGCAAAGGGAAGCCTGGTCTTCCTGTATTGCCATGCTTCTCATATCTATGCTAAAGTCCCTCTGGCGAGTGGGGCCCCGCAGTTTCCTGGTCCTGGGGGCTGTCCTGTGTGGCGGTATGAGCAGGGTCACCAAGGGCTGCTGGCCTGGAATTTTGCTGGGAGAACTGGGAAAACCGCCCTGGAGGACTTGGGGCCTTAGGTGTTGGACCTGTGCCTGCGAGTGTGACCATACCCTTGCTGATCTGGCCTCAG
Seq C2 exon
GAAAATGATGTAGTTCCCCCAGGCATGGAGAGCCTCATTAGTGCCCCACTGGTCAAGACCTCAGAAAAGGAAGAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436:ENSBTAT00000011100:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.519
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(22.9=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACCCCTGAGCGGAAGAT
R:
CTGTTCCTCTTCCTTTTCTGAGGT
Band lengths:
214-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development