MmuINT0032752 @ mm9
Intron Retention
Gene
ENSMUSG00000027330 | Cdc25b
Description
cell division cycle 25 homolog B (S. pombe) [Source:MGI Symbol;Acc:MGI:99701]
Coordinates
chr2:131018293-131018884:+
Coord C1 exon
chr2:131018293-131018424
Coord A exon
chr2:131018425-131018803
Coord C2 exon
chr2:131018804-131018884
Length
379 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CCTTACTGCTTTGACCTCAGGAT
3' ss Score
7.58
Exon sequences
Seq C1 exon
TGTCTTACCACTGAGTGGAAGATGGAAGTAGAGGAGCTGAGCCCGGTGGCACAGTCTTCTTCCTTGACTCCTGTCGAAAGGGCTTCTGAAGAAGATGACGGATTTGTGGACATCCTGGAGAGTGATTTAAAG
Seq A exon
GTAAACAGCCTTGGTCCGCAGGCCCCTACTTGTTCCCCGCTTGGACAACCCAGACAATCAGCAAGACTACAACCTTACCCCAATGCCAGAAGAATTTGAGGGAACTGATATTGACCAATCAGAAGACCAGGTGGGCTGGTGCTACAGAGGAATGGAGGCTAGGCATGACAAAGGTACTTCTCCTGGCTCAGGGCAAGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGGTGTTCCTGAAACTCTTTGGGGTGGAGGGTGCTGCCATAGTCAGCAGCACTGGGGGCAGCCTATTGTTTCTGGGAGAGTAAGCTAGAGAAGACTCCGAGGTTAACCCATGCTTGTGCTTGTGATTCTGTCCTTACTGCTTTGACCTCAG
Seq C2 exon
GATGACGAGAAGGTCCCCGCGGGCATGGAGAACCTCATTAGTGCCCCACTGGTCAAAAAGCTGGATAAGGAAGAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027330-Cdc25b:NM_023117:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.523 A=NA C2=0.309
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(15.9=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGATGGAAGTAGAGGAGCT
R:
CTGTTCCTCTTCCTTATCCAGCT
Band lengths:
198-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: