GgaINT0090383 @ galGal4
Intron Retention
Gene
ENSGALG00000004934 | CDC25A
Description
M-phase inducer phosphatase 1 [Source:RefSeq peptide;Acc:NP_001186501]
Coordinates
chr2:572892-573720:+
Coord C1 exon
chr2:572892-573026
Coord A exon
chr2:573027-573645
Coord C2 exon
chr2:573646-573720
Length
619 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
GAAATTTCTTTGTTTCTTAGAAT
3' ss Score
7.31
Exon sequences
Seq C1 exon
TTTCCCACTCAAGAAATGCCCACGGGTGAACTGGAAAACTACGGGCCAGCTTTCCTGCAGCAGTCTTCTCTGACTTCCTCTGAAAGCGAAGATGACGACGGATTCCTGGAGCTCTTAGATGAGCAAGATCTGAAA
Seq A exon
GTAGGTACCAAAGAAATGTGCTGCTCTTCTAAACTCAGCTCTGTGTACTGTGGAGGTTGCAGCACATGCACATTCTGGTGGTGATTCAGACTGCAGGTAGGCAGGCACGAGGGATTCCTGAAAGACTCAGTTATGGTTCTCAACTCTTCCACTGTAGCTGTTTTTATGCGCTGTTCCCTAGTGCAAACAGTGGGATTTGCTTGGTGTGTGAACAGCAGTTAGAGAGGTATTGCTGCTTTTCCTACTAGTATTTGAACTGTGAGGCTATAGAGGATGATTGGAAGAGTTGGCATTTTCTTTAGAAACTCTCTGAGGGAGCTAAAGGTAATATTTGTTTTCAGATCACTTAAATAAAAGTCCAGTCCCTAGCTGAACTCGACATGCTTAAGGCTTTGGAAGGGCATTGTTAATAATCAATGAATGAATTGATTTAACTCATCCTTTCCAATGTGGCTCAACTCATCACTCAGTGCAATAACAGAGTTGGTAATGGAGTCCTTAAAGCTGCTCAGGCAGCTGAATTCAGCTGGAAAGTTTGCCCAAGCTTACAGGAGCCTCGGGTATTTACAGTGTCTGTCAGCAGGGAGACAGATGAGAGTGAAATTTCTTTGTTTCTTAG
Seq C2 exon
AATGATGAGGAGATGCCCTCTGATGTGGCGAGCCTCTGGACTGCGCCGCTGGTCACCAGGAGGCCGGACAGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934:ENSGALT00000007893:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.902
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PU(26.4=92.5)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(16.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCACTCAAGAAATGCCCAC
R:
GACTGTCCGGCCTCCTGG
Band lengths:
206-825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]