MmuINT0032736 @ mm9
Intron Retention
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25 homolog A (S. pombe) [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109785993-109786697:+
Coord C1 exon
chr9:109785993-109786118
Coord A exon
chr9:109786119-109786622
Coord C2 exon
chr9:109786623-109786697
Length
504 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
GCAGTTTTCTCTTGCTCTAGAAT
3' ss Score
7.28
Exon sequences
Seq C1 exon
CTATCTTCAAATGAAAGTGAATCAGGAAATTTCAGTCCTCTTTTTATACCCCAGTCACCTGTAAAAGCCACTTTGTCCGATGAGGATGATGGCTTCATAGACCTTCTGGATGGCGAGAATATGAAG
Seq A exon
GTACAGTCTGTGGGTGTGGGCGTGTCTGTTCATTCTAACCAGCCTGCAGAAGCCTCCTAAAAAACAGTTCATTTTGTGAGAGTTCATTGAGTCTTCTGTCTGTTTGACTAAATCCAGCAGGGTGATAGGTCAGATAATACTGGTAAGATCTTTCTCCTTACCCTGAGGGACACTAACGATAGGGAAGGAGAAAGGTTTTGAGATACTTCTGGAACTAAGATATAGCATGTGCTTAGGGGAGTGTACAAGGCCTTAGGCTCAATCAATCCCTTGTACCAAGAAGAAACAGGCCTGCTCTGGTGTTCCATGCCAGAAATTTTAACATTCAGGATGCTAGCCAAACACAGTAAGACTCTGTCTCCAAAACAAAACACAAAACTTCTTATCTAGGCTTATCTGGCATTTCTTAGGAGAGTTACCTGCAAAACATTTGGTTGCTGGGTCTTTTTCTTCTTCCTAGCCCCTCTGCTAGATGTATTTAAAAGCAGTTTTCTCTTGCTCTAG
Seq C2 exon
AATGATGAGGAGACCCCATCATGCATGGCAAGCCTCTGGACAGCTCCCCTTGTCATGAGGAGACCTGCAAACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477-Cdc25a:NM_007658:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.858 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(17.4=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCAAATGAAAGTGAATCAGGAA
R:
AAGGTTTGCAGGTCTCCTCATG
Band lengths:
198-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: