RnoINT0032513 @ rn6
Intron Retention
Gene
ENSRNOG00000020737 | Cdc25a
Description
cell division cycle 25A [Source:RGD Symbol;Acc:621498]
Coordinates
chr8:117961083-117961836:+
Coord C1 exon
chr8:117961083-117961217
Coord A exon
chr8:117961218-117961761
Coord C2 exon
chr8:117961762-117961836
Length
544 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
GCAGTTTTCTCTTCGTCTAGAAT
3' ss Score
5.43
Exon sequences
Seq C1 exon
CTGTCTTCAAATGAAAGTGACATTAGTGAATCAGGAAATTTCAGTCCTCTTTTTACACCCCAGTCACCTGTGAAAGCCACTTTGTCTGATGAGGATGATGGCTTCATAGACCTTCTGGATGGAGAGAATCTGAAG
Seq A exon
GTACCATCTGTGGGTGGGTGTGCCTATTCATTCTAACCACCCTGCAGGAGCCTGGCTGACTGAATGATTGTTCATTTTTGTGAGAGTTCATTGACTCTTCTGCTTGACTAAAGCAGGGTGGGTGGGTCAGATAATACTGGTAAGATCTTCCCTCTTACCCTGAGGGACACTAACCAGTCTTAGGAATAGGGAAGGAGGAGTGTATTGAGATACTTCTGGAACTAAGATACAGCTTAGTGGTAAAGCCTGTGCTTCAGCTGTACAAGGCCTTAGGCTCAATCAATCCCTCGTACCAAAAAAAAAGCCTGCCCTGGTGTTACATGCCAGTAATCTCAACATTCAGGATGCTGAACAGAAGAAGGATCAACATATAAGCCCCAAGTTCAAGGCCAGCCAGCCAGTGCTTCACAGCCTCCAACAACAAAACAAACTTACCTAGACTTACCTGGCATTTCTTAGGAGAGTTAGTCTGCTGGATCTTTTTCTTCTTCCCATCCCCTCTCCTCTGCTGGATCTATTTAAAAGCAGTTTTCTCTTCGTCTAG
Seq C2 exon
AATGATGAGGAGACCCCGTCGTGCATGTCAAGCCTCTGGACCGCTCCCCTTGTCATGAGAAGACCTACAAACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020737:ENSRNOT00000028141:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=NA C2=0.480
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=FE(18.0=100)
A:
NA
C2:
PF066178=M-inducer_phosp=FE(9.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTCAAATGAAAGTGACATTAGT
R:
AGGTTTGTAGGTCTTCTCATGACA
Band lengths:
208-752
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]