BtaINT0034919 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008436 | CDC25B
Description
cell division cycle 25B [Source:HGNC Symbol;Acc:HGNC:1726]
Coordinates
chr13:51853965-51855516:-
Coord C1 exon
chr13:51855405-51855516
Coord A exon
chr13:51855251-51855404
Coord C2 exon
chr13:51853965-51855250
Length
154 bp
Sequences
Splice sites
5' ss Seq
CCGGTACCA
5' ss Score
4.7
3' ss Seq
CCCATCCCATCCTGCCCTAGACC
3' ss Score
9.22
Exon sequences
Seq C1 exon
GTGCCGTTTCATCAGGGAACGAGACAGAGCCTCCAACGACTACCCCAGCCTCTACTATCCTGAGATGTATATCCTCAAAGGCGGCTACAAGGACTTCTTCCCACAGCACCCG
Seq A exon
GTACCACGGGTTGGGGTGGCCATAGCATCCGTGGGAGGTTTGGGCTACAGGGAAAGGGGTTGACCAGGCAGTAGCCCTCGGATAAGGGAGGATAGAGTCCTCTCTGAAGTTGCCCAGGTCCCCATGTTGATTGCCCCATCCCATCCTGCCCTAG
Seq C2 exon
ACCTTCTGTGAGCCTCAAGACTACCGGCCCATGAACCATGAGGACTTCAAGGATGAAATGAAGACCTTCCGACTCAAGACACGCAGCTGGGCTGGCGAGCGGAGCCGGCGAGAGCTTTGCAGCCGCCTGCAGGACCAGTGAAGGGCCAGCAACTGTCCCACCCGCCTTCCTTACTTTGTGCGGCCTGGGCATCAGCCGCCCTGTGGCCTCCGGGGCTGAGGGTCTGCTGTCCAGGGAAAAGATGGTGAGGGCGTCCTGTCTGCCTGCACCAGCCCTGATCCTCTGTCTCACTCCAGTCATGTTCCGTATCCTGGTGACACCCCCATCCTCACTCCAGGAGAGCCCAGCCTGCTGACTAAGTGAAATTGGATTAAGTCTAGCTCAAAGGAAGTATTTGTGTCTAACAGGAGCCTTTTTGGTGTCTTTTTCTTCCTTGTTTGGGTTAACCCTTTGTCTTGCTGTATTCAGAAAAGCCTCTTTTTTCCTAAGAGCTTTGTTTATATGTATGTGGCTGAGAGAAAGCTCCAGCCTCCTAGAAGGAGCCACCGCTACCCTCGGAGTTAGCACCATGTCCCAGGTGCTAACATACTCCTAAGTGTGTGTGCCAAACTCCCTTCTCCTTCCCGTCTCTTCATGTGAACATCTCCAGCACAGGCACGAGCTCTTCCTCTTTCCTGTTTCAGTGTTATTTGTATGTTTGATCTCTTTTTTTTTTCCATCTCAGGATAGTTACAGGCTAAGGTTTAGGTTTTCCCTGTCCAGTTGTTAAAGATACAAACATTCATAACCCACTTGGCCCTGGCTTCTGTGGCTCGGAAAGGGATGTTATTATCCATGGAGGCCCCTAGGTGAGGGTTAAGGCCTGCATCCTGAGCCCACTGGAAACCTAGCCCTCACTGCTGTGAACCCTGGGGGCTGAACCCACGTCAGAACTTGCTGCTGTCTCGTCACAGATGGACAGATGGACAAATGGAAGTGTGGATGGATAGTGGGTGCATGGATGGCCATAGACCCACAATGCCTTGTCCACAAACCACTGAACTGAGGCATTTCAGTGAGTGTGACTGCCTGCAGCAGGAGTATACATGTGCCTGTCTGTGTGAACAAAATCTTTACACTTTTAAGATTTGGAGATATTCAAAAGGAAATTTTATGAAAGCAGCTAAACTAAGGCCAGCCACTTCTGGATTCTGAATCTTGGGAAATGGGCAGGGCTTCTTGAAGGCTCTGCTGAGTCATCTAGAAGGGTCTTGGTTCAATAAAGCACTGAGCAAGCTGAGTAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008436:ENSBTAT00000011100:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PD(32.4=92.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGACTACCCCAGCCTCTAC
R:
CAAAGTAAGGAAGGCGGGTGG
Band lengths:
256-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development