RnoINT0032525 @ rn6
Intron Retention
Gene
ENSRNOG00000021248 | Cdc25b
Description
cell division cycle 25B [Source:RGD Symbol;Acc:621500]
Coordinates
chr3:123740096-123741339:+
Coord C1 exon
chr3:123740096-123740207
Coord A exon
chr3:123740208-123740361
Coord C2 exon
chr3:123740362-123741339
Length
154 bp
Sequences
Splice sites
5' ss Seq
CCGGTACCA
5' ss Score
4.7
3' ss Seq
CTCATCTTCTCATCCCCTAGAAC
3' ss Score
9.99
Exon sequences
Seq C1 exon
GTGCCGCTTCATCAGGGAACGGGACCGTGCAGCTAACGACTATCCCAGCCTGTACTACCCTGAGATGTACATCCTCAAAGGCGGCTACAAGGAGTTCTTCCCGCAGCATCCG
Seq A exon
GTACCATGGGTGGGATGGTCACAGCTCTCCCATCGTGGACTGTAGGAACAGGACCCAACTAGGCTATAGGCCCTACCCATACCCCCACCCCCAGCCCCCAGAACTTACTCTTTCTCCCATACTGATGGACTCTTCTCATCTTCTCATCCCCTAG
Seq C2 exon
AACTTTTGTGAGCCCCAGGACTACCGACCCATGAACCATGCAGCTTTCCGGGATGAGCTGAGGAACTTCCGCCTCAAGACACGCAGCTGGGCTGGGGAACGGAGCAGGAGGGAACTCTGTAGCAGGCTGCAAGACCAGTGACGAGCCAGCCTCAGTCCTGCCACCATCCTTACCTCAGGAGGCTTGCGAGCCAGTGGGTCCCATGGGCCTATGCGGCCACCTACTTGCTAGAGGCCTCAGGTGCTATAGGGGGTTGGGGGGATGGTGTGGTGTCACATCTGTCTGTCCCTGTCCTCAATTTTCCTGTCTCACTCCACTAATTTTCTGTATCTTGGTACTGATCCCATCTTAAAGAGCTGAACCAATGGGTGAATACCAGCTAAGAGGAAGTCCTTTGTGTTCAATGAGAGCCCTTTTACAATCTCCTTTTTCCTTGTTTGTGTTGACTCCTTGTCTTACCCCTTCGCAGGGAGAGCCTCAGCCCTTTAAGATGAGCACAGTAGCTTCTTGGGTAGCCTGGATGCAGGACGCTACACTGCTGCACAGGGCTGTGTCTGCTCTCCTCTCCTGGCCTCTGCACAGATTCCTCCATTGGAAGCATAAGTGCTTACTTTTCCTGTTGTCGTCTTACCCATAGCTTTCATTTTCGTCTGTCTCACTTAGCGTGTCCCAGGACACACTGACAGCTGGGGAGGCTCCCTTGTACAGCTGGGGACTAGAGATTCAAATATCATGTACTCATTAGGCTTGGCTTTTGTTAGCCCACAAAGGGATCTTTTCCTTTAAGACCCCCAGAGCTAGAGCAAAGGCCTGATTCAGGAGCCTCTGGGAGCCCCATCCTCACTGCTGTGAACCCTAGAGCCTCGCTGGTCAGCACTTGTTGCTGGGCAATGAACCAGTCACTGAGCTTCACTTTTTGGTCCTTCTCTGTCCCTCCCTGTCCCTCTCTGTCCTTCTTTCCATATCTGGTCCTGAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021248:ENSRNOT00000051064:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PD(32.4=92.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCCTGTACTACCCTGAG
R:
GAGGTAAGGATGGTGGCAGGA
Band lengths:
245-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]